Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   K0V03_RS19335 Genome accession   NZ_CP080508
Coordinates   3622507..3622956 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain HD15     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3617507..3627956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS19295 (K0V03_19295) ctaE 3617524..3618147 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  K0V03_RS19300 (K0V03_19300) ctaF 3618150..3618482 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  K0V03_RS19305 (K0V03_19305) ctaG 3618509..3619402 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  K0V03_RS19310 (K0V03_19310) ylbA 3619434..3619796 (-) 363 WP_003232238.1 YugN family protein -
  K0V03_RS19315 (K0V03_19315) ylbB 3619936..3620382 (+) 447 WP_003221362.1 CBS domain-containing protein -
  K0V03_RS19320 (K0V03_19320) ylbC 3620466..3621506 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  K0V03_RS19325 (K0V03_19325) ylbD 3621738..3622136 (+) 399 WP_014476725.1 YlbD family protein -
  K0V03_RS19330 (K0V03_19330) ylbE 3622152..3622391 (+) 240 WP_003232231.1 YlbE-like family protein -
  K0V03_RS19335 (K0V03_19335) ylbF 3622507..3622956 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  K0V03_RS19340 (K0V03_19340) ylbG 3623011..3623283 (+) 273 WP_009967171.1 YlbG family protein -
  K0V03_RS19345 (K0V03_19345) rsmD 3623606..3624160 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K0V03_RS19350 (K0V03_19350) coaD 3624165..3624650 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  K0V03_RS19355 (K0V03_19355) spoVV 3624661..3625887 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  K0V03_RS19360 (K0V03_19360) ylbK 3626068..3626850 (+) 783 WP_003232221.1 patatin family protein -
  K0V03_RS19365 (K0V03_19365) sepM 3626852..3627877 (+) 1026 WP_032725643.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=520085 K0V03_RS19335 WP_003221370.1 3622507..3622956(+) (ylbF) [Bacillus subtilis strain HD15]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=520085 K0V03_RS19335 WP_003221370.1 3622507..3622956(+) (ylbF) [Bacillus subtilis strain HD15]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1