Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SMUGS5_RS01130 Genome accession   NC_018089
Coordinates   224436..225488 (+) Length   350 a.a.
NCBI ID   WP_002265822.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 219436..230488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS01115 (SMUGS5_01000) - 220715..222364 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  SMUGS5_RS01120 (SMUGS5_01005) - 222470..223384 (+) 915 WP_014834805.1 ABC transporter permease -
  SMUGS5_RS01125 (SMUGS5_01010) - 223395..224426 (+) 1032 WP_002263989.1 ABC transporter permease -
  SMUGS5_RS01130 (SMUGS5_01015) oppD 224436..225488 (+) 1053 WP_002265822.1 ABC transporter ATP-binding protein Regulator
  SMUGS5_RS01135 (SMUGS5_01020) amiF 225481..226407 (+) 927 WP_002263991.1 ABC transporter ATP-binding protein Regulator
  SMUGS5_RS01140 (SMUGS5_01025) - 227063..227665 (+) 603 WP_002262735.1 nitroreductase family protein -
  SMUGS5_RS01145 (SMUGS5_01030) - 227882..228837 (-) 956 Protein_194 helix-turn-helix transcriptional regulator -
  SMUGS5_RS01150 (SMUGS5_01040) ptcA 229076..230095 (+) 1020 WP_019319870.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39231.78 Da        Isoelectric Point: 5.9292

>NTDB_id=52008 SMUGS5_RS01130 WP_002265822.1 224436..225488(+) (oppD) [Streptococcus mutans GS-5]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWRKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=52008 SMUGS5_RS01130 WP_002265822.1 224436..225488(+) (oppD) [Streptococcus mutans GS-5]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCACCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTAGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGAGAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.143

100

0.991
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.441

99.714

0.543
  amiE Streptococcus thermophilus LMD-9

54.441

99.714

0.543

Multiple sequence alignment