Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMUGS5_RS01135 Genome accession   NC_018089
Coordinates   225481..226407 (+) Length   308 a.a.
NCBI ID   WP_002263991.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 220481..231407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS01115 (SMUGS5_01000) - 220715..222364 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  SMUGS5_RS01120 (SMUGS5_01005) - 222470..223384 (+) 915 WP_014834805.1 ABC transporter permease -
  SMUGS5_RS01125 (SMUGS5_01010) - 223395..224426 (+) 1032 WP_002263989.1 ABC transporter permease -
  SMUGS5_RS01130 (SMUGS5_01015) oppD 224436..225488 (+) 1053 WP_002265822.1 ABC transporter ATP-binding protein Regulator
  SMUGS5_RS01135 (SMUGS5_01020) amiF 225481..226407 (+) 927 WP_002263991.1 ABC transporter ATP-binding protein Regulator
  SMUGS5_RS01140 (SMUGS5_01025) - 227063..227665 (+) 603 WP_002262735.1 nitroreductase family protein -
  SMUGS5_RS01145 (SMUGS5_01030) - 227882..228837 (-) 956 Protein_194 helix-turn-helix transcriptional regulator -
  SMUGS5_RS01150 (SMUGS5_01040) ptcA 229076..230095 (+) 1020 WP_019319870.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34857.00 Da        Isoelectric Point: 7.3331

>NTDB_id=52009 SMUGS5_RS01135 WP_002263991.1 225481..226407(+) (amiF) [Streptococcus mutans GS-5]
MTENRKKLIEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=52009 SMUGS5_RS01135 WP_002263991.1 225481..226407(+) (amiF) [Streptococcus mutans GS-5]
ATGACTGAAAATCGTAAAAAACTAATTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGAGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGAGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.738

99.026

0.552
  amiF Streptococcus thermophilus LMG 18311

55.41

99.026

0.549
  amiF Streptococcus salivarius strain HSISS4

55.41

99.026

0.549

Multiple sequence alignment