Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K0819_RS13275 Genome accession   NZ_CP080478
Coordinates   2779354..2780082 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2774354..2785082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS13260 (K0819_13195) clpC 2774789..2777362 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  K0819_RS13265 (K0819_13200) pgeF 2777510..2778238 (-) 729 WP_025639993.1 peptidoglycan editing factor PgeF -
  K0819_RS13270 (K0819_13205) rluD 2778240..2779217 (-) 978 WP_109883410.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K0819_RS13275 (K0819_13210) comL 2779354..2780082 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  K0819_RS13280 (K0819_13215) - 2780217..2781698 (+) 1482 WP_317408554.1 lytic transglycosylase F -
  K0819_RS13285 (K0819_13220) hpf 2782029..2782355 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K0819_RS13290 (K0819_13225) pheA 2782599..2783777 (+) 1179 WP_005468591.1 prephenate dehydratase -
  K0819_RS13295 (K0819_13230) yjjX 2783802..2784335 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  K0819_RS13300 (K0819_13235) trpR 2784384..2784695 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=519940 K0819_RS13275 WP_005460312.1 2779354..2780082(+) (comL) [Vibrio parahaemolyticus strain Vp2015094]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=519940 K0819_RS13275 WP_005460312.1 2779354..2780082(+) (comL) [Vibrio parahaemolyticus strain Vp2015094]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405