Detailed information NTG0519895

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K0819_RS02885
• Genome accession: NZ_CP080478
• Coordinates: 586007..586876 (-)
• Length: 289 a.a.
• NCBI ID: WP_109884272.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain Vp2015094
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 581007..591876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0819_RS02850 (K0819_02865)	rpsP	581968..582216 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
K0819_RS02855 (K0819_02870)	rimM	582245..582793 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
K0819_RS02860 (K0819_02875)	trmD	582821..583564 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K0819_RS02865 (K0819_02880)	rplS	583606..583959 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
K0819_RS02870 (K0819_02885)	yacG	584361..584555 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
K0819_RS02875 (K0819_02890)	zapD	584624..585364 (-)	741	WP_005480890.1	cell division protein ZapD	-
K0819_RS02880 (K0819_02895)	coaE	585392..586006 (-)	615	WP_025541329.1	dephospho-CoA kinase	-
K0819_RS02885 (K0819_02900)	pilD	586007..586876 (-)	870	WP_109884272.1	prepilin peptidase	Machinery gene
K0819_RS02890 (K0819_02905)	pilC	586941..588164 (-)	1224	WP_025505035.1	type II secretion system F family protein	Machinery gene
K0819_RS02895 (K0819_02910)	pilB	588189..589874 (-)	1686	WP_109884270.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K0819_RS02900 (K0819_02915)	pilA	589881..590285 (-)	405	WP_140336762.1	pilin	Machinery gene
K0819_RS02905 (K0819_02920)	nadC	590549..591436 (-)	888	WP_021450015.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32381.33 Da
• Isoelectric Point: 6.8205

>NTDB_id=519895 K0819_RS02885 WP_109884272.1 586007..586876(-) (pilD) [Vibrio parahaemolyticus strain Vp2015094]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACSGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGTALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=519895 K0819_RS02885 WP_109884272.1 586007..586876(-) (pilD) [Vibrio parahaemolyticus strain Vp2015094]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCTCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCACTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTACTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45