Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JEQ25_RS01965 Genome accession   NZ_CP066380
Coordinates   364520..364969 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain ID-A05     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359520..369969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS01925 (JEQ25_01925) - 359964..360159 (+) 196 Protein_335 hypothetical protein -
  JEQ25_RS01930 (JEQ25_01930) - 360199..360513 (+) 315 Protein_336 RDD family protein -
  JEQ25_RS01935 (JEQ25_01935) yckD 360595..360927 (+) 333 WP_015252849.1 YckD family protein -
  JEQ25_RS01940 (JEQ25_01940) - 361055..361477 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  JEQ25_RS01945 (JEQ25_01945) - 361465..361806 (+) 342 WP_032724911.1 DUF3147 family protein -
  JEQ25_RS01950 (JEQ25_01950) - 361825..362553 (+) 729 WP_046380777.1 AAA family ATPase -
  JEQ25_RS01955 (JEQ25_01955) bglC 362625..364058 (+) 1434 WP_046380778.1 6-phospho-beta-glucosidase -
  JEQ25_RS01960 (JEQ25_01960) nin/comJ 364095..364493 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  JEQ25_RS01965 (JEQ25_01965) nucA/comI 364520..364969 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  JEQ25_RS01970 (JEQ25_01970) tlpC 365137..366858 (-) 1722 WP_046380779.1 methyl-accepting chemotaxis protein TlpC -
  JEQ25_RS01975 (JEQ25_01975) hxlB 366969..367526 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  JEQ25_RS01980 (JEQ25_01980) hxlA 367532..368164 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  JEQ25_RS01985 (JEQ25_01985) hxlR 368393..368755 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=519788 JEQ25_RS01965 WP_003234608.1 364520..364969(-) (nucA/comI) [Bacillus subtilis strain ID-A05]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=519788 JEQ25_RS01965 WP_003234608.1 364520..364969(-) (nucA/comI) [Bacillus subtilis strain ID-A05]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98