Detailed information NTG0519787

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: K1T75_RS00635
• Genome accession: NZ_CP080465
• Coordinates: 129543..130712 (+)
• Length: 389 a.a.
• NCBI ID: WP_000136718.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain ICDC-VC3741
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124543..135712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1T75_RS00600	-	125380..125850 (-)	471	WP_000224703.1	Dps family protein	-
K1T75_RS00605	-	126020..126349 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
K1T75_RS00610	-	126554..126922 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
K1T75_RS00615	-	127425..127682 (+)	258	WP_000479993.1	hypothetical protein	-
K1T75_RS00620	-	127799..128428 (+)	630	WP_000062274.1	lysoplasmalogenase	-
K1T75_RS00625	-	128477..128743 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
K1T75_RS00630	rsmD	128740..129339 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
K1T75_RS00635	pilA	129543..130712 (+)	1170	WP_000136718.1	signal recognition particle-docking protein FtsY	Machinery gene
K1T75_RS00640	ftsE	130761..131435 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
K1T75_RS00645	ftsX	131425..132417 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
K1T75_RS00650	rpoH	132587..133447 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
K1T75_RS00655	sthA	133649..135049 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 42574.25 Da
• Isoelectric Point: 4.4974

>NTDB_id=519787 K1T75_RS00635 WP_000136718.1 129543..130712(+) (pilA) [Vibrio cholerae strain ICDC-VC3741]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETATVEPARIVEQE
KPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1170 bp

>NTDB_id=519787 K1T75_RS00635 WP_000136718.1 129543..130712(+) (pilA) [Vibrio cholerae strain ICDC-VC3741]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAG
AAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGT
GATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCA
AGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGC
GCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGG
CGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (105-166)

• SRP54-type protein, GTPase domain (SRP54) (186-385)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54	77.121	0.416