Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K1T74_RS11215 Genome accession   NZ_CP080462
Coordinates   2443344..2444069 (+) Length   241 a.a.
NCBI ID   WP_000877197.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2438344..2449069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS11200 clpC 2438792..2441365 (-) 2574 WP_001235055.1 ATP-dependent chaperone ClpB Regulator
  K1T74_RS11205 pgeF 2441490..2442212 (-) 723 WP_220105779.1 peptidoglycan editing factor PgeF -
  K1T74_RS11210 rluD 2442215..2443189 (-) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K1T74_RS11215 comL 2443344..2444069 (+) 726 WP_000877197.1 outer membrane protein assembly factor BamD Machinery gene
  K1T74_RS11220 hpf 2444471..2444797 (+) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K1T74_RS11225 pheA 2445036..2446211 (+) 1176 WP_069504402.1 prephenate dehydratase -
  K1T74_RS11230 - 2446393..2447433 (+) 1041 WP_000595744.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27817.65 Da        Isoelectric Point: 5.4017

>NTDB_id=519756 K1T74_RS11215 WP_000877197.1 2443344..2444069(+) (comL) [Vibrio cholerae strain ICDC-VC702]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLAIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=519756 K1T74_RS11215 WP_000877197.1 2443344..2444069(+) (comL) [Vibrio cholerae strain ICDC-VC702]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATAGAAAAACTCG
AAGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
CAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.004

100

0.39
  comL Neisseria gonorrhoeae MS11

38.174

100

0.382