Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JEQ16_RS14835 Genome accession   NZ_CP066377
Coordinates   3002636..3003280 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain ID-A01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2997636..3008280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS14800 (JEQ16_14705) - 2998821..2999252 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  JEQ16_RS14805 (JEQ16_14710) - 2999252..2999593 (+) 342 WP_278071271.1 Na(+)/H(+) antiporter subunit C -
  JEQ16_RS14810 (JEQ16_14715) - 2999586..3001067 (+) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  JEQ16_RS14815 (JEQ16_14720) - 3001073..3001549 (+) 477 WP_278071272.1 Na+/H+ antiporter subunit E -
  JEQ16_RS14820 (JEQ16_14725) - 3001549..3001833 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  JEQ16_RS14825 (JEQ16_14730) mnhG 3001817..3002191 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JEQ16_RS14830 (JEQ16_14735) - 3002231..3002614 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  JEQ16_RS14835 (JEQ16_14740) comA 3002636..3003280 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  JEQ16_RS14840 (JEQ16_14745) comP 3003361..3005667 (-) 2307 WP_153986739.1 sensor histidine kinase Regulator
  JEQ16_RS14845 (JEQ16_14750) comX 3005686..3005862 (-) 177 WP_278071273.1 competence pheromone ComX -
  JEQ16_RS14850 (JEQ16_14755) - 3005877..3006752 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  JEQ16_RS14855 (JEQ16_14760) degQ 3006904..3007044 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JEQ16_RS14860 (JEQ16_14765) - 3007411..3007752 (+) 342 WP_278071274.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=519613 JEQ16_RS14835 WP_003152052.1 3002636..3003280(-) (comA) [Bacillus velezensis strain ID-A01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=519613 JEQ16_RS14835 WP_003152052.1 3002636..3003280(-) (comA) [Bacillus velezensis strain ID-A01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864