Detailed information NTG0519562

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JEQ16_RS01955
• Genome accession: NZ_CP066377
• Coordinates: 383204..384352 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain ID-A01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 378204..389352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JEQ16_RS01935 (JEQ16_01925)	-	378601..379284 (-)	684	WP_165409872.1	ABC transporter ATP-binding protein	-
JEQ16_RS01940 (JEQ16_01930)	-	379299..380735 (-)	1437	WP_278071568.1	ABC transporter permease	-
JEQ16_RS01945 (JEQ16_01935)	-	380948..381631 (+)	684	WP_014416901.1	response regulator transcription factor	-
JEQ16_RS01950 (JEQ16_01940)	-	381618..383051 (+)	1434	WP_278071569.1	HAMP domain-containing sensor histidine kinase	-
JEQ16_RS01955 (JEQ16_01945)	rapC	383204..384352 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
JEQ16_RS01960 (JEQ16_01950)	phrC	384336..384455 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
JEQ16_RS01965 (JEQ16_01955)	-	384604..384699 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
JEQ16_RS01970 (JEQ16_01960)	-	384794..386158 (-)	1365	WP_070081361.1	aspartate kinase	-
JEQ16_RS01975 (JEQ16_01965)	ceuB	386573..387526 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
JEQ16_RS01980 (JEQ16_01970)	-	387516..388463 (+)	948	WP_278071570.1	iron chelate uptake ABC transporter family permease subunit	-
JEQ16_RS01985 (JEQ16_01975)	-	388457..389215 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=519562 JEQ16_RS01955 WP_003156336.1 383204..384352(+) (rapC) [Bacillus velezensis strain ID-A01]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=519562 JEQ16_RS01955 WP_003156336.1 383204..384352(+) (rapC) [Bacillus velezensis strain ID-A01]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568