Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ICN77_RS08145 Genome accession   NZ_CP066376
Coordinates   1597708..1598580 (-) Length   290 a.a.
NCBI ID   WP_002503405.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PH1-28     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1592708..1603580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN77_RS08130 (ICN77_001481) xerC 1593009..1593899 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  ICN77_RS08135 (ICN77_001482) trmFO 1594124..1595431 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ICN77_RS08140 (ICN77_001483) topA 1595456..1597525 (-) 2070 WP_002503404.1 type I DNA topoisomerase -
  ICN77_RS08145 (ICN77_001484) dprA 1597708..1598580 (-) 873 WP_002503405.1 DNA-processing protein DprA Machinery gene
  ICN77_RS12565 - 1598920..1599135 (-) 216 Protein_1429 transposase -
  ICN77_RS08150 (ICN77_001485) sucD 1599385..1600293 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ICN77_RS08155 (ICN77_001486) sucC 1600315..1601481 (-) 1167 WP_198895659.1 ADP-forming succinate--CoA ligase subunit beta -
  ICN77_RS08160 (ICN77_001487) - 1601589..1602359 (-) 771 WP_198895660.1 ribonuclease HII -
  ICN77_RS08165 (ICN77_001488) ylqF 1602364..1603227 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33698.60 Da        Isoelectric Point: 9.3574

>NTDB_id=519545 ICN77_RS08145 WP_002503405.1 1597708..1598580(-) (dprA) [Staphylococcus epidermidis strain PH1-28]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRKINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=519545 ICN77_RS08145 WP_002503405.1 1597708..1598580(-) (dprA) [Staphylococcus epidermidis strain PH1-28]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAAGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.597

99.31

0.562
  dprA Staphylococcus aureus MW2

56.597

99.31

0.562