Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICN77_RS04440 Genome accession   NZ_CP066376
Coordinates   811557..811952 (+) Length   131 a.a.
NCBI ID   WP_198895856.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PH1-28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 806557..816952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN77_RS04415 (ICN77_000738) - 807976..808380 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  ICN77_RS04420 (ICN77_000739) - 808529..808762 (+) 234 WP_002456242.1 DUF1146 family protein -
  ICN77_RS04425 (ICN77_000740) murA 808872..810137 (+) 1266 WP_198895855.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ICN77_RS04430 (ICN77_000741) fabZ 810171..810608 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ICN77_RS04435 (ICN77_000742) - 810926..811366 (-) 441 WP_001829935.1 YwpF-like family protein -
  ICN77_RS04440 (ICN77_000743) ssb 811557..811952 (+) 396 WP_198895856.1 single-stranded DNA-binding protein Machinery gene
  ICN77_RS04445 (ICN77_000744) - 812340..812999 (+) 660 WP_001829904.1 transglycosylase family protein -
  ICN77_RS04450 (ICN77_000745) tenA 813284..813973 (+) 690 WP_001829894.1 thiaminase II -
  ICN77_RS04455 (ICN77_000746) thiD 813966..814787 (+) 822 WP_002503648.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ICN77_RS04460 (ICN77_000747) thiM 814780..815568 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  ICN77_RS04465 (ICN77_000748) thiE 815574..816212 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15182.06 Da        Isoelectric Point: 5.6984

>NTDB_id=519527 ICN77_RS04440 WP_198895856.1 811557..811952(+) (ssb) [Staphylococcus epidermidis strain PH1-28]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFEHNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=519527 ICN77_RS04440 WP_198895856.1 811557..811952(+) (ssb) [Staphylococcus epidermidis strain PH1-28]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAACACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733