Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   ICN77_RS01990 Genome accession   NZ_CP066376
Coordinates   297875..298540 (+) Length   221 a.a.
NCBI ID   WP_001830679.1    Uniprot ID   A0A2G7HYS8
Organism   Staphylococcus epidermidis strain PH1-28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 292875..303540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN77_RS01975 (ICN77_000250) - 294233..295776 (+) 1544 Protein_246 NAD(P)H-binding protein -
  ICN77_RS01980 (ICN77_000251) - 295899..297368 (-) 1470 WP_002456720.1 alkaline phosphatase -
  ICN77_RS01985 (ICN77_000252) - 297665..297844 (+) 180 WP_002456719.1 hypothetical protein -
  ICN77_RS01990 (ICN77_000253) braR 297875..298540 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  ICN77_RS01995 (ICN77_000254) braS 298546..299442 (+) 897 WP_002456718.1 sensor histidine kinase Regulator
  ICN77_RS02000 (ICN77_000255) - 299553..300302 (+) 750 WP_198895790.1 ABC transporter ATP-binding protein -
  ICN77_RS02005 (ICN77_000256) - 300304..302316 (+) 2013 WP_198895791.1 ABC transporter permease -
  ICN77_RS02010 (ICN77_000257) - 302420..303010 (+) 591 WP_002485462.1 DUF4064 domain-containing protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25629.71 Da        Isoelectric Point: 5.0250

>NTDB_id=519522 ICN77_RS01990 WP_001830679.1 297875..298540(+) (braR) [Staphylococcus epidermidis strain PH1-28]
MKIFIVEDDLVIAESLANELSKWNYEVHVVDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEMRKVSHVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDDLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=519522 ICN77_RS01990 WP_001830679.1 297875..298540(+) (braR) [Staphylococcus epidermidis strain PH1-28]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
GCATGTGGTTGATAATTTTGAAAAGATAATGGAAGATTTTCGCCGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATGCGAAAAGTATCTCATGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATCCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCCAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAGTGTTGGGAGTCTGAGAATTTTATTGA
TGATAATACGCTCGCAGTAAATATGACACGATTACGAAAAAAATTACTTTCTATCGGTGTCGATGATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2G7HYS8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792