Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K0H55_RS05920 Genome accession   NZ_CP080370
Coordinates   1205119..1205856 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PK5086     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200119..1210856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H55_RS05890 (K0H55_05890) yfiL 1200277..1200642 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  K0H55_RS05895 (K0H55_05895) aroF 1200852..1201922 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K0H55_RS05900 (K0H55_05900) tyrA 1201933..1203054 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K0H55_RS05905 (K0H55_05905) pheA 1203097..1204257 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  K0H55_RS05910 (K0H55_05910) pheL 1204356..1204403 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  K0H55_RS05915 (K0H55_05915) raiA 1204507..1204848 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K0H55_RS05920 (K0H55_05920) comL 1205119..1205856 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K0H55_RS05925 (K0H55_05925) rluD 1205991..1206971 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K0H55_RS05930 (K0H55_05930) yfiH 1206968..1207699 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  K0H55_RS05935 (K0H55_05935) clpC 1207829..1210402 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=519461 K0H55_RS05920 WP_000197686.1 1205119..1205856(-) (comL) [Escherichia coli strain PK5086]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=519461 K0H55_RS05920 WP_000197686.1 1205119..1205856(-) (comL) [Escherichia coli strain PK5086]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376