Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JFU10_RS18715 Genome accession   NZ_CP066337
Coordinates   3772326..3773225 (+) Length   299 a.a.
NCBI ID   WP_198863694.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3767326..3778225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS18695 - 3768017..3769720 (+) 1704 WP_166706291.1 glycosyl transferase -
  JFU10_RS18700 - 3769717..3769998 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  JFU10_RS18705 sucC 3770173..3771330 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  JFU10_RS18710 sucD 3771359..3772261 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  JFU10_RS18715 dprA 3772326..3773225 (+) 900 WP_198863694.1 DNA-processing protein DprA Machinery gene
  JFU10_RS18720 topA 3773407..3775482 (+) 2076 WP_071391835.1 type I DNA topoisomerase -
  JFU10_RS18725 trmFO 3775547..3776854 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JFU10_RS18730 xerC 3776924..3777841 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32898.94 Da        Isoelectric Point: 7.5073

>NTDB_id=519359 JFU10_RS18715 WP_198863694.1 3772326..3773225(+) (dprA) [Bacillus velezensis strain Mr12]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTASEEIFREIERKDPELDEVLSDYRRESITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=519359 JFU10_RS18715 WP_198863694.1 3772326..3773225(+) (dprA) [Bacillus velezensis strain Mr12]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCAGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCTCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAAGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTACAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699