Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JFU10_RS18745 Genome accession   NZ_CP066337
Coordinates   3779860..3780639 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Mr12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3774860..3785639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS18725 trmFO 3775547..3776854 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JFU10_RS18730 xerC 3776924..3777841 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JFU10_RS18735 hslV 3777857..3778402 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JFU10_RS18740 hslU 3778419..3779822 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  JFU10_RS18745 codY 3779860..3780639 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JFU10_RS18750 flgB 3780993..3781382 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JFU10_RS18755 flgC 3781382..3781834 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  JFU10_RS18760 fliE 3781845..3782165 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JFU10_RS18765 fliF 3782208..3783818 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  JFU10_RS18770 fliG 3783831..3784847 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JFU10_RS18775 fliH 3784840..3785595 (+) 756 WP_062623354.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=519360 JFU10_RS18745 WP_003154263.1 3779860..3780639(+) (codY) [Bacillus velezensis strain Mr12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=519360 JFU10_RS18745 WP_003154263.1 3779860..3780639(+) (codY) [Bacillus velezensis strain Mr12]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACTGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471