Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GKQ51_RS16895 Genome accession   NZ_CP066310
Coordinates   3590713..3592311 (+) Length   532 a.a.
NCBI ID   WP_198868102.1    Uniprot ID   A0AAP9YGM1
Organism   Azotobacter chroococcum strain HR1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3585713..3597311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ51_RS16880 (GKQ51_16880) - 3586555..3587868 (+) 1314 Protein_3316 IS4 family transposase -
  GKQ51_RS16885 (GKQ51_16885) - 3588582..3590216 (-) 1635 WP_169531404.1 NAD+ synthase -
  GKQ51_RS16890 (GKQ51_16890) - 3590445..3590687 (+) 243 WP_131254828.1 PP0621 family protein -
  GKQ51_RS16895 (GKQ51_16895) pilS 3590713..3592311 (+) 1599 WP_198868102.1 sensor histidine kinase Regulator
  GKQ51_RS16900 (GKQ51_16900) pilR 3592355..3593695 (+) 1341 WP_089169020.1 sigma-54-dependent transcriptional regulator Regulator
  GKQ51_RS16905 (GKQ51_16905) thiO 3593830..3594927 (-) 1098 WP_198866530.1 glycine oxidase ThiO -
  GKQ51_RS16910 (GKQ51_16910) - 3595023..3595577 (-) 555 WP_198866531.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58652.94 Da        Isoelectric Point: 8.9026

>NTDB_id=519258 GKQ51_RS16895 WP_198868102.1 3590713..3592311(+) (pilS) [Azotobacter chroococcum strain HR1]
MIGTPLDGPQGGNVLRLYHLYRLVIGLLLVLLISSNLDERLLKVAHPELFHHGSWFYLILNILVAVLVHHPKPLQIFSLA
LVDVILLSGLLYTAGGPSSGIGNLIIVSVAVANILLHGRIGLLIAAVAASGLVYMTFYLGLNRPAAASQYVHAGALGSLC
FASALLVQSLTRRLRRSESLAERRAAEVADLQALNAQILERMRTGILVLDPQQQVLLANQSAFTLLGNPALTGQPLAAHC
PELVERLQQWQQNPTLRPQDLHTLPHGPLVQPNFVALTRGGRRGILVFLEDISQIAQQAQQLKLASLGRLTAGIAHEIRN
PLGAISHAAQLLQESECLDGPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFAGEYRASAAPNQIL
HLEIRDGSLKTRMDANQLIQILTNLVQNGLRYSAQCHPQGQVWLRLFRAPESDLPVLEVRDDGPGVPAEQIEHIFEPFFT
TETKGTGLGLYISRELCESNQARLDYRGGAGEGGCFRITFAHPRKLTQARHG

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=519258 GKQ51_RS16895 WP_198868102.1 3590713..3592311(+) (pilS) [Azotobacter chroococcum strain HR1]
CTGATCGGCACCCCGCTGGACGGCCCCCAGGGCGGCAACGTCCTGCGCCTGTACCACCTGTACCGGCTGGTCATCGGCCT
GCTGCTGGTGCTGCTGATCTCCAGCAATCTGGACGAGCGGCTGCTGAAGGTCGCCCACCCGGAGCTGTTCCACCACGGCA
GCTGGTTCTACCTGATCCTGAACATTCTGGTCGCCGTTCTGGTGCACCACCCCAAACCCCTGCAGATCTTCAGCCTGGCA
CTGGTCGACGTGATCCTGCTTTCGGGCCTGCTCTACACGGCCGGTGGCCCGTCCAGCGGCATCGGCAACCTGATCATCGT
CTCGGTGGCCGTCGCCAACATCCTCCTGCACGGACGGATCGGTCTGCTGATCGCCGCCGTGGCGGCCAGCGGCCTGGTCT
ACATGACCTTCTACCTGGGCCTCAACCGCCCTGCGGCCGCCAGCCAGTACGTGCATGCGGGAGCGCTGGGCTCGCTGTGC
TTCGCCAGCGCGCTGCTCGTGCAGAGCCTGACCCGCCGCCTGCGGCGCAGCGAATCCCTGGCCGAACGACGCGCCGCCGA
GGTCGCCGACCTGCAGGCCCTGAACGCGCAGATCCTGGAGCGCATGCGGACCGGCATCCTGGTGCTCGACCCGCAGCAGC
AGGTGCTGCTGGCCAACCAGAGCGCCTTCACCCTGCTGGGCAACCCCGCACTGACCGGACAGCCGCTCGCCGCCCACTGC
CCGGAACTGGTCGAGCGCCTGCAGCAGTGGCAGCAGAACCCGACCCTGCGCCCGCAGGACCTGCACACCCTGCCCCACGG
TCCGCTGGTGCAACCGAACTTCGTCGCCCTCACGCGGGGCGGACGGCGGGGCATCCTGGTCTTCCTCGAGGACATCTCGC
AGATCGCCCAGCAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGCCGGCTGACCGCCGGCATCGCCCACGAGATCCGCAAT
CCGCTCGGCGCCATCAGCCACGCCGCCCAGCTGCTGCAGGAGTCCGAGTGCCTCGACGGCCCCGACCGGCGCCTGGCGCA
GATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTGCTGCAGCTGTCGCGCCGGCGCCAGGCCGAAC
CGCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCGGCGAATACCGCGCCTCGGCGGCGCCGAACCAGATCCTG
CACCTGGAGATCCGGGACGGTTCCCTGAAGACCCGCATGGACGCGAACCAGCTGATCCAGATCCTCACCAATCTGGTGCA
GAACGGCCTGCGCTACAGCGCCCAGTGCCACCCGCAGGGACAGGTCTGGCTCAGGCTGTTCCGCGCCCCGGAAAGCGACC
TGCCGGTCCTCGAAGTGCGCGACGACGGCCCCGGCGTGCCCGCCGAGCAGATCGAGCACATCTTCGAACCCTTCTTCACC
ACCGAAACCAAAGGCACCGGACTGGGCCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCCCGCCTCGACTACCG
CGGCGGCGCAGGTGAAGGCGGCTGCTTCCGCATCACCTTCGCCCACCCACGCAAGCTGACCCAGGCACGCCACGGATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-520)

His Kinase A (phospho-acceptor) domain (HisKA)

(306-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.392

98.308

0.643