Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   IGS65_RS06535 Genome accession   NZ_CP066294
Coordinates   1332765..1333817 (-) Length   350 a.a.
NCBI ID   WP_002268461.1    Uniprot ID   A0AAX1K1R1
Organism   Streptococcus mutans strain 27-3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327765..1338817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS06520 (IGS65_006520) gshAB 1328191..1330512 (+) 2322 WP_192072046.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  IGS65_RS06525 (IGS65_006525) - 1330589..1331191 (-) 603 WP_002279522.1 nitroreductase family protein -
  IGS65_RS06530 (IGS65_006530) amiF 1331846..1332772 (-) 927 WP_002267002.1 ATP-binding cassette domain-containing protein Regulator
  IGS65_RS06535 (IGS65_006535) oppD 1332765..1333817 (-) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  IGS65_RS06540 (IGS65_006540) - 1333827..1334858 (-) 1032 WP_019313824.1 ABC transporter permease -
  IGS65_RS06545 (IGS65_006545) - 1334869..1335783 (-) 915 WP_192072045.1 ABC transporter permease -
  IGS65_RS06550 (IGS65_006550) - 1335889..1337538 (-) 1650 WP_002280728.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39204.71 Da        Isoelectric Point: 5.5768

>NTDB_id=519139 IGS65_RS06535 WP_002268461.1 1332765..1333817(-) (oppD) [Streptococcus mutans strain 27-3]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=519139 IGS65_RS06535 WP_002268461.1 1332765..1333817(-) (oppD) [Streptococcus mutans strain 27-3]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGCATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTATACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.429

100

0.994
  amiE Streptococcus salivarius strain HSISS4

55.014

99.714

0.549
  amiE Streptococcus thermophilus LMG 18311

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMD-9

54.728

99.714

0.546