Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IGS65_RS06530 Genome accession   NZ_CP066294
Coordinates   1331846..1332772 (-) Length   308 a.a.
NCBI ID   WP_002267002.1    Uniprot ID   A0AAX1K1D7
Organism   Streptococcus mutans strain 27-3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326846..1337772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS06520 (IGS65_006520) gshAB 1328191..1330512 (+) 2322 WP_192072046.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  IGS65_RS06525 (IGS65_006525) - 1330589..1331191 (-) 603 WP_002279522.1 nitroreductase family protein -
  IGS65_RS06530 (IGS65_006530) amiF 1331846..1332772 (-) 927 WP_002267002.1 ATP-binding cassette domain-containing protein Regulator
  IGS65_RS06535 (IGS65_006535) oppD 1332765..1333817 (-) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  IGS65_RS06540 (IGS65_006540) - 1333827..1334858 (-) 1032 WP_019313824.1 ABC transporter permease -
  IGS65_RS06545 (IGS65_006545) - 1334869..1335783 (-) 915 WP_192072045.1 ABC transporter permease -
  IGS65_RS06550 (IGS65_006550) - 1335889..1337538 (-) 1650 WP_002280728.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34842.97 Da        Isoelectric Point: 7.3331

>NTDB_id=519138 IGS65_RS06530 WP_002267002.1 1331846..1332772(-) (amiF) [Streptococcus mutans strain 27-3]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=519138 IGS65_RS06530 WP_002267002.1 1331846..1332772(-) (amiF) [Streptococcus mutans strain 27-3]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGATCCAGTTGATGAGTTAGATGGGCAGGAACGAGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552