Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   H9K57_RS19140 Genome accession   NZ_CP066247
Coordinates   658649..659830 (+) Length   393 a.a.
NCBI ID   WP_021450908.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 653649..664830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS19120 (H9K57_19025) - 654308..655432 (+) 1125 WP_025604515.1 fatty acid desaturase -
  H9K57_RS19125 (H9K57_19030) - 655433..655981 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  H9K57_RS19130 (H9K57_19035) - 655982..656599 (+) 618 WP_005481262.1 HAD family phosphatase -
  H9K57_RS19135 (H9K57_19040) cqsS 656600..658648 (+) 2049 WP_237468937.1 hybrid sensor histidine kinase/response regulator Regulator
  H9K57_RS19140 (H9K57_19045) cqsA 658649..659830 (+) 1182 WP_021450908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H9K57_RS19145 (H9K57_19050) ylqF 659831..660775 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  H9K57_RS19150 (H9K57_19055) - 660776..661513 (+) 738 WP_005454086.1 EAL domain-containing protein -
  H9K57_RS19155 (H9K57_19060) - 661550..663802 (+) 2253 WP_248378832.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43824.14 Da        Isoelectric Point: 6.4984

>NTDB_id=518907 H9K57_RS19140 WP_021450908.1 658649..659830(+) (cqsA) [Vibrio parahaemolyticus strain DHO76]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=518907 H9K57_RS19140 WP_021450908.1 658649..659830(+) (cqsA) [Vibrio parahaemolyticus strain DHO76]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578