Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   H9K57_RS19135 Genome accession   NZ_CP066247
Coordinates   656600..658648 (+) Length   682 a.a.
NCBI ID   WP_237468937.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 651600..663648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS19110 (H9K57_19015) - 652349..652939 (+) 591 WP_005477566.1 LemA family protein -
  H9K57_RS19115 (H9K57_19020) dcuC 652940..654307 (+) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  H9K57_RS19120 (H9K57_19025) - 654308..655432 (+) 1125 WP_025604515.1 fatty acid desaturase -
  H9K57_RS19125 (H9K57_19030) - 655433..655981 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  H9K57_RS19130 (H9K57_19035) - 655982..656599 (+) 618 WP_005481262.1 HAD family phosphatase -
  H9K57_RS19135 (H9K57_19040) cqsS 656600..658648 (+) 2049 WP_237468937.1 hybrid sensor histidine kinase/response regulator Regulator
  H9K57_RS19140 (H9K57_19045) cqsA 658649..659830 (+) 1182 WP_021450908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H9K57_RS19145 (H9K57_19050) ylqF 659831..660775 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  H9K57_RS19150 (H9K57_19055) - 660776..661513 (+) 738 WP_005454086.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78313.18 Da        Isoelectric Point: 5.8750

>NTDB_id=518906 H9K57_RS19135 WP_237468937.1 656600..658648(+) (cqsS) [Vibrio parahaemolyticus strain DHO76]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLIFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKVGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYASVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=518906 H9K57_RS19135 WP_237468937.1 656600..658648(+) (cqsS) [Vibrio parahaemolyticus strain DHO76]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
GATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTGATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGATTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAAAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGATCAGGTATTGCGCCAGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGGCTACCGTTCTGTAAGAAAGTCATGCGTTCGTTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGATTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGATGAGCTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTACAAAAAATGGCAGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCGCAACGAGCTAAAAAAGTTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACCAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACGCTGCCATCAGCGCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAATCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCATCTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCTGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.834

100

0.491