Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   H9K57_RS13120 Genome accession   NZ_CP066246
Coordinates   2749442..2750056 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744442..2755056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS13100 (H9K57_12985) - 2744727..2745644 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  H9K57_RS13105 (H9K57_12990) - 2745897..2747567 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  H9K57_RS13110 (H9K57_12995) can 2747851..2748519 (+) 669 WP_005462578.1 carbonate dehydratase -
  H9K57_RS13115 (H9K57_13000) hpt 2748593..2749123 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  H9K57_RS13120 (H9K57_13005) opaR 2749442..2750056 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  H9K57_RS13125 (H9K57_13010) lpdA 2750184..2751611 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  H9K57_RS13130 (H9K57_13015) aceF 2751880..2753766 (-) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=518884 H9K57_RS13120 WP_005479697.1 2749442..2750056(+) (opaR) [Vibrio parahaemolyticus strain DHO76]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=518884 H9K57_RS13120 WP_005479697.1 2749442..2750056(+) (opaR) [Vibrio parahaemolyticus strain DHO76]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701