Detailed information NTG0518865

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: I2453_RS08070
• Genome accession: NZ_CP066242
• Coordinates: 1544253..1545665 (-)
• Length: 470 a.a.
• NCBI ID: WP_011049986.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain RM1221
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1539253..1550665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2453_RS08045	-	1539577..1540341 (+)	765	WP_002855821.1	TSUP family transporter	-
I2453_RS08050	ctsF	1540334..1541515 (-)	1182	WP_002867247.1	type II secretion system F family protein	Machinery gene
I2453_RS08055	ctsE	1541512..1543071 (-)	1560	WP_002867246.1	GspE/PulE family protein	Machinery gene
I2453_RS08060	ctsX	1543061..1543648 (-)	588	WP_002867245.1	hypothetical protein	Machinery gene
I2453_RS08065	ctsP	1543652..1544260 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
I2453_RS08070	ctsD	1544253..1545665 (-)	1413	WP_011049986.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
I2453_RS08075	ctsR	1545643..1545954 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
I2453_RS08080	nifJ	1545978..1549538 (-)	3561	WP_002877436.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
I2453_RS08085	-	1549631..1550272 (-)	642	WP_002867242.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53122.71 Da
• Isoelectric Point: 6.6184

>NTDB_id=518865 I2453_RS08070 WP_011049986.1 1544253..1545665(-) (ctsD) [Campylobacter jejuni strain RM1221]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=518865 I2453_RS08070 WP_011049986.1 1544253..1545665(-) (ctsD) [Campylobacter jejuni strain RM1221]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGTGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.787	100	0.998