Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   I2453_RS08060 Genome accession   NZ_CP066242
Coordinates   1543061..1543648 (-) Length   195 a.a.
NCBI ID   WP_002867245.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1221     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1538061..1548648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2453_RS08040 - 1538809..1539573 (+) 765 WP_011049985.1 TIGR02757 family protein -
  I2453_RS08045 - 1539577..1540341 (+) 765 WP_002855821.1 TSUP family transporter -
  I2453_RS08050 ctsF 1540334..1541515 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  I2453_RS08055 ctsE 1541512..1543071 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  I2453_RS08060 ctsX 1543061..1543648 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  I2453_RS08065 ctsP 1543652..1544260 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  I2453_RS08070 ctsD 1544253..1545665 (-) 1413 WP_011049986.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  I2453_RS08075 ctsR 1545643..1545954 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23354.40 Da        Isoelectric Point: 9.8409

>NTDB_id=518863 I2453_RS08060 WP_002867245.1 1543061..1543648(-) (ctsX) [Campylobacter jejuni strain RM1221]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPNYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=518863 I2453_RS08060 WP_002867245.1 1543061..1543648(-) (ctsX) [Campylobacter jejuni strain RM1221]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAACTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATTGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.462

100

0.985