Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   I2453_RS03450 Genome accession   NZ_CP066242
Coordinates   628205..628855 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain RM1221     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 623205..633855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2453_RS03415 - 623583..624587 (+) 1005 WP_011049741.1 membrane protein -
  I2453_RS03420 tlyA 624584..625345 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  I2453_RS03425 ribF 625311..626165 (+) 855 WP_011049742.1 bifunctional riboflavin kinase/FAD synthetase -
  I2453_RS03430 cmoA 626152..626862 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  I2453_RS03435 - 626852..627073 (-) 222 WP_002859102.1 EexN family lipoprotein -
  I2453_RS03440 - 627070..627504 (-) 435 WP_002855128.1 EexN family lipoprotein -
  I2453_RS03445 - 627562..628194 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  I2453_RS03450 CJE0566 628205..628855 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  I2453_RS03455 nth 628852..629478 (-) 627 WP_002852225.1 endonuclease III -
  I2453_RS03460 peb4 629559..630380 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  I2453_RS03465 fbaA 630380..631444 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  I2453_RS03470 - 631539..632981 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=518845 I2453_RS03450 WP_002852117.1 628205..628855(-) (CJE0566) [Campylobacter jejuni strain RM1221]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=518845 I2453_RS03450 WP_002852117.1 628205..628855(-) (CJE0566) [Campylobacter jejuni strain RM1221]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63