Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   IOO20_RS05960 Genome accession   NZ_CP066241
Coordinates   1137107..1137409 (+) Length   100 a.a.
NCBI ID   WP_002853046.1    Uniprot ID   Q0P9H7
Organism   Campylobacter jejuni strain RM1221     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132107..1142409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS05935 rpsR 1132470..1132730 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  IOO20_RS05940 lon 1132790..1135165 (-) 2376 WP_002853487.1 endopeptidase La -
  IOO20_RS05945 - 1135182..1135829 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  IOO20_RS05950 fliW 1135990..1136379 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  IOO20_RS05955 proC 1136379..1137110 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  IOO20_RS05960 ctsT 1137107..1137409 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  IOO20_RS05965 - 1137406..1138068 (+) 663 WP_002858296.1 hypothetical protein -
  IOO20_RS05970 - 1138065..1138517 (+) 453 WP_002859148.1 hypothetical protein -
  IOO20_RS05975 hemD 1138514..1139143 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  IOO20_RS05980 thiE 1139121..1139753 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  IOO20_RS05985 thiD 1139743..1140555 (-) 813 WP_002867189.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IOO20_RS05990 - 1140552..1141238 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  IOO20_RS05995 - 1141235..1141996 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12162.27 Da        Isoelectric Point: 6.2957

>NTDB_id=518820 IOO20_RS05960 WP_002853046.1 1137107..1137409(+) (ctsT) [Campylobacter jejuni strain RM1221]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=518820 IOO20_RS05960 WP_002853046.1 1137107..1137409(+) (ctsT) [Campylobacter jejuni strain RM1221]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P9H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

99

100

0.99