Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   IOO20_RS05955 Genome accession   NZ_CP066241
Coordinates   1136379..1137110 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain RM1221     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131379..1142110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS05925 rpsF 1131525..1131902 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  IOO20_RS05930 ssb 1131911..1132459 (+) 549 WP_002860190.1 single-stranded DNA-binding protein -
  IOO20_RS05935 rpsR 1132470..1132730 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  IOO20_RS05940 lon 1132790..1135165 (-) 2376 WP_002853487.1 endopeptidase La -
  IOO20_RS05945 - 1135182..1135829 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  IOO20_RS05950 fliW 1135990..1136379 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  IOO20_RS05955 proC 1136379..1137110 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  IOO20_RS05960 ctsT 1137107..1137409 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  IOO20_RS05965 - 1137406..1138068 (+) 663 WP_002858296.1 hypothetical protein -
  IOO20_RS05970 - 1138065..1138517 (+) 453 WP_002859148.1 hypothetical protein -
  IOO20_RS05975 hemD 1138514..1139143 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  IOO20_RS05980 thiE 1139121..1139753 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  IOO20_RS05985 thiD 1139743..1140555 (-) 813 WP_002867189.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IOO20_RS05990 - 1140552..1141238 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  IOO20_RS05995 - 1141235..1141996 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=518819 IOO20_RS05955 WP_002859150.1 1136379..1137110(+) (proC) [Campylobacter jejuni strain RM1221]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=518819 IOO20_RS05955 WP_002859150.1 1136379..1137110(+) (proC) [Campylobacter jejuni strain RM1221]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996