Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IOO20_RS03635 Genome accession   NZ_CP066241
Coordinates   673648..674421 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1221     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 668648..679421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS03620 - 669497..671431 (-) 1935 WP_002867720.1 ribonuclease R family protein -
  IOO20_RS03625 ilvC 671550..672572 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  IOO20_RS03630 - 672576..673658 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  IOO20_RS03635 dprA 673648..674421 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  IOO20_RS03640 ruvX 674418..674801 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  IOO20_RS03645 - 674830..675669 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  IOO20_RS03650 msrA 675845..676342 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IOO20_RS03655 ppa 676384..676902 (-) 519 WP_002867724.1 inorganic diphosphatase -
  IOO20_RS03660 adk 676912..677490 (-) 579 WP_011049749.1 adenylate kinase -
  IOO20_RS03665 aspS 677487..679238 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=518816 IOO20_RS03635 WP_002867721.1 673648..674421(+) (dprA) [Campylobacter jejuni strain RM1221]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=518816 IOO20_RS03635 WP_002867721.1 673648..674421(+) (dprA) [Campylobacter jejuni strain RM1221]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455