Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   IOO20_RS03440 Genome accession   NZ_CP066241
Coordinates   628216..628866 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain RM1221     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 623216..633866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS03405 - 623594..624598 (+) 1005 WP_011049741.1 membrane protein -
  IOO20_RS03410 tlyA 624595..625356 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  IOO20_RS03415 ribF 625322..626176 (+) 855 WP_011049742.1 bifunctional riboflavin kinase/FAD synthetase -
  IOO20_RS03420 cmoA 626163..626873 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  IOO20_RS03425 - 626863..627084 (-) 222 WP_002859102.1 EexN family lipoprotein -
  IOO20_RS03430 - 627081..627515 (-) 435 WP_002855128.1 EexN family lipoprotein -
  IOO20_RS03435 - 627573..628205 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  IOO20_RS03440 CJE0566 628216..628866 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  IOO20_RS03445 nth 628863..629489 (-) 627 WP_002852225.1 endonuclease III -
  IOO20_RS03450 peb4 629570..630391 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  IOO20_RS03455 fbaA 630391..631455 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  IOO20_RS03460 - 631550..632992 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=518815 IOO20_RS03440 WP_002852117.1 628216..628866(-) (CJE0566) [Campylobacter jejuni strain RM1221]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=518815 IOO20_RS03440 WP_002852117.1 628216..628866(-) (CJE0566) [Campylobacter jejuni strain RM1221]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63