Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   JCR18_RS17765 Genome accession   NZ_CP066232
Coordinates   3681182..3681922 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain G20AB010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3676182..3686922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR18_RS17745 (JCR18_17745) aroB 3676722..3677804 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  JCR18_RS17750 (JCR18_17750) aroK 3677833..3678402 (-) 570 WP_000643712.1 shikimate kinase AroK -
  JCR18_RS17755 (JCR18_17755) pilQ 3678414..3680576 (-) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  JCR18_RS17760 (JCR18_17760) pilP 3680644..3681171 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  JCR18_RS17765 (JCR18_17765) pilO 3681182..3681922 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  JCR18_RS17770 (JCR18_17770) pilN 3681919..3682560 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  JCR18_RS17775 (JCR18_17775) pilM 3682560..3683618 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  JCR18_RS17780 (JCR18_17780) ponA 3683781..3686336 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=518709 JCR18_RS17765 WP_000076101.1 3681182..3681922(-) (pilO) [Acinetobacter baumannii strain G20AB010]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=518709 JCR18_RS17765 WP_000076101.1 3681182..3681922(-) (pilO) [Acinetobacter baumannii strain G20AB010]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683