Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I5435_RS23020 Genome accession   NZ_CP066226
Coordinates   4673651..4674223 (-) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus sp. C5.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4668651..4679223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5435_RS22995 - 4669554..4670219 (-) 666 WP_051147788.1 ATP-binding cassette domain-containing protein -
  I5435_RS23000 - 4670212..4671498 (-) 1287 WP_337983045.1 hypothetical protein -
  I5435_RS23005 - 4671495..4672427 (-) 933 WP_153062816.1 hypothetical protein -
  I5435_RS23010 - 4672714..4673133 (-) 420 WP_108031099.1 hypothetical protein -
  I5435_RS23015 rpsR 4673367..4673603 (-) 237 WP_024364646.1 30S ribosomal protein S18 -
  I5435_RS23020 ssbA 4673651..4674223 (-) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  I5435_RS23025 rpsF 4674260..4674550 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  I5435_RS23030 - 4674724..4675287 (+) 564 WP_108031100.1 DUF3267 domain-containing protein -
  I5435_RS23035 - 4675314..4676354 (-) 1041 WP_024364642.1 acyl-CoA dehydrogenase family protein -
  I5435_RS23040 ychF 4676524..4677624 (-) 1101 WP_024364641.1 redox-regulated ATPase YchF -
  I5435_RS23045 - 4677980..4678180 (-) 201 WP_024364640.1 DUF951 domain-containing protein -
  I5435_RS23050 - 4678182..4679063 (-) 882 WP_108031102.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=518619 I5435_RS23020 WP_024364645.1 4673651..4674223(-) (ssbA) [Lysinibacillus sp. C5.1]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=518619 I5435_RS23020 WP_024364645.1 4673651..4674223(-) (ssbA) [Lysinibacillus sp. C5.1]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTGAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGCGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCGAACCAATACGGCGGACAATCTTACGCTAATAGCCAGCCGTCATATGGCGGTGGACAAC
CACAACAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTGCTTCTTATCAGCAAAATCAACCACCA
ATGAATCAGCCGAACTATACACGAGTAGACGAAGATCCGTTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5