Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JEM45_RS02275 Genome accession   NZ_CP066224
Coordinates   418417..418740 (-) Length   107 a.a.
NCBI ID   WP_026866390.1    Uniprot ID   -
Organism   Jeotgalicoccus sp. ATCC 8456     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413417..423740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEM45_RS02230 (JEM45_02230) - 413804..414709 (+) 906 WP_026866382.1 DUF1385 domain-containing protein -
  JEM45_RS02235 (JEM45_02235) - 414709..414927 (+) 219 WP_026866383.1 SA1362 family protein -
  JEM45_RS02240 (JEM45_02240) - 414953..415339 (+) 387 WP_026866384.1 rhodanese-like domain-containing protein -
  JEM45_RS02245 (JEM45_02245) gcvT 415400..416482 (-) 1083 WP_026866385.1 glycine cleavage system aminomethyltransferase GcvT -
  JEM45_RS02250 (JEM45_02250) - 416727..417215 (-) 489 WP_198687674.1 shikimate kinase -
  JEM45_RS02255 (JEM45_02255) - 417227..417403 (-) 177 WP_198687675.1 hypothetical protein -
  JEM45_RS02260 (JEM45_02260) - 417378..417767 (-) 390 WP_026866387.1 competence type IV pilus minor pilin ComGF -
  JEM45_RS02265 (JEM45_02265) - 417764..418018 (-) 255 WP_026866388.1 hypothetical protein -
  JEM45_RS02270 (JEM45_02270) comGD 418008..418439 (-) 432 WP_370545412.1 competence type IV pilus minor pilin ComGD -
  JEM45_RS02275 (JEM45_02275) comGC 418417..418740 (-) 324 WP_026866390.1 competence type IV pilus major pilin ComGC Machinery gene
  JEM45_RS02280 (JEM45_02280) comGB 418752..419807 (-) 1056 WP_035855989.1 competence type IV pilus assembly protein ComGB -
  JEM45_RS02285 (JEM45_02285) comGA 419770..420762 (-) 993 WP_198687677.1 competence type IV pilus ATPase ComGA -
  JEM45_RS02290 (JEM45_02290) - 420997..421245 (+) 249 WP_026866393.1 DUF2626 family protein -
  JEM45_RS02295 (JEM45_02295) - 421290..421901 (-) 612 WP_026866394.1 MBL fold metallo-hydrolase -
  JEM45_RS02300 (JEM45_02300) - 421999..422238 (+) 240 WP_198687678.1 DUF2759 domain-containing protein -
  JEM45_RS02305 (JEM45_02305) argH 422280..423656 (-) 1377 WP_198687679.1 argininosuccinate lyase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11773.53 Da        Isoelectric Point: 4.4295

>NTDB_id=518571 JEM45_RS02275 WP_026866390.1 418417..418740(-) (comGC) [Jeotgalicoccus sp. ATCC 8456]
MRRAFIRRFKDQEDGFTLIEMLLVLLVISVLIILIIPNIAAQSRNVQDTGCDAQVKMVQSQIEAYTLNEGSPPTSVDTLV
PTYLSTDQISCQNGDSITITNGTAVRS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=518571 JEM45_RS02275 WP_026866390.1 418417..418740(-) (comGC) [Jeotgalicoccus sp. ATCC 8456]
ATGAGACGTGCATTTATAAGAAGATTTAAAGATCAAGAAGATGGATTTACTTTAATTGAAATGTTATTAGTATTGCTTGT
TATCTCGGTTCTGATTATTTTAATCATTCCCAATATCGCTGCACAGAGTCGTAATGTACAAGACACAGGTTGTGATGCTC
AAGTTAAAATGGTGCAAAGTCAAATAGAAGCCTATACTTTAAATGAAGGGTCGCCGCCGACCAGTGTAGATACACTTGTG
CCGACTTATCTGTCTACAGATCAAATCAGTTGCCAAAACGGTGACTCTATTACAATTACTAATGGCACAGCTGTCCGTTC
ATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

54.545

92.523

0.505
  comGC Staphylococcus aureus N315

54.545

92.523

0.505