Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JD965_RS12005 Genome accession   NZ_CP066219
Coordinates   2386105..2387835 (-) Length   576 a.a.
NCBI ID   WP_198697864.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381105..2392835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS11980 (JD965_11980) - 2381521..2381733 (+) 213 WP_032864884.1 spore germination protein -
  JD965_RS11985 (JD965_11985) - 2381858..2382070 (+) 213 WP_016939010.1 spore germination protein -
  JD965_RS11990 (JD965_11990) alr 2382256..2383437 (+) 1182 WP_016939009.1 alanine racemase -
  JD965_RS11995 (JD965_11995) spo0A 2383581..2384381 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  JD965_RS12000 (JD965_12000) spoIVB 2384661..2385941 (-) 1281 WP_198697863.1 SpoIVB peptidase -
  JD965_RS12005 (JD965_12005) recN 2386105..2387835 (-) 1731 WP_198697864.1 DNA repair protein RecN Machinery gene
  JD965_RS12010 (JD965_12010) ahrC 2387867..2388316 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  JD965_RS12015 (JD965_12015) - 2388413..2389258 (-) 846 WP_016939006.1 TlyA family RNA methyltransferase -
  JD965_RS12020 (JD965_12020) dxs 2389255..2391156 (-) 1902 WP_198697865.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JD965_RS12025 (JD965_12025) - 2391299..2392189 (-) 891 WP_198697866.1 polyprenyl synthetase family protein -
  JD965_RS12030 (JD965_12030) - 2392179..2392433 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63996.76 Da        Isoelectric Point: 4.6975

>NTDB_id=518507 JD965_RS12005 WP_198697864.1 2386105..2387835(-) (recN) [Bacillus siamensis strain B28]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYQEGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQNGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=518507 JD965_RS12005 WP_198697864.1 2386105..2387835(-) (recN) [Bacillus siamensis strain B28]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGAGACATTAATGCCGGGGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATTGCAGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACA
ACCAGCTGTTAATGGAAGATGACAAACATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCATACCAAGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AAGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGCTAGATGATCTGGAGT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTC
GAAGACATTCTGGAATACGGCTCCAAAATAGAAGAGGAAATTGATCAAATCGAAAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCCTGGGCCA
AAAAACTGGCGGAAGCAATTCATCAGGAATTAAAAAGCCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCTGCCAGTGAAGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAATGGGATTGACCTTGT
GAAATTTTTAATTTCAACGAACACCGGTGAGCCCTTAAAACCGCTGTCAAAGGTCGCATCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGCTGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGATGAAGTGGACACTGGCGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTTTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACACATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGACCTGACAAAACGG
CATGCGCAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891