Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JD965_RS11995 Genome accession   NZ_CP066219
Coordinates   2383581..2384381 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus siamensis strain B28     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378581..2389381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS11965 (JD965_11965) - 2379128..2379760 (+) 633 WP_016939014.1 helix-turn-helix domain-containing protein -
  JD965_RS11970 (JD965_11970) - 2380053..2380190 (+) 138 WP_162829239.1 hypothetical protein -
  JD965_RS11975 (JD965_11975) - 2380278..2381396 (+) 1119 WP_016939012.1 NADH-dependent flavin oxidoreductase -
  JD965_RS11980 (JD965_11980) - 2381521..2381733 (+) 213 WP_032864884.1 spore germination protein -
  JD965_RS11985 (JD965_11985) - 2381858..2382070 (+) 213 WP_016939010.1 spore germination protein -
  JD965_RS11990 (JD965_11990) alr 2382256..2383437 (+) 1182 WP_016939009.1 alanine racemase -
  JD965_RS11995 (JD965_11995) spo0A 2383581..2384381 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  JD965_RS12000 (JD965_12000) spoIVB 2384661..2385941 (-) 1281 WP_198697863.1 SpoIVB peptidase -
  JD965_RS12005 (JD965_12005) recN 2386105..2387835 (-) 1731 WP_198697864.1 DNA repair protein RecN Machinery gene
  JD965_RS12010 (JD965_12010) ahrC 2387867..2388316 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  JD965_RS12015 (JD965_12015) - 2388413..2389258 (-) 846 WP_016939006.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=518506 JD965_RS11995 WP_003153177.1 2383581..2384381(-) (spo0A) [Bacillus siamensis strain B28]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=518506 JD965_RS11995 WP_003153177.1 2383581..2384381(-) (spo0A) [Bacillus siamensis strain B28]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTAATCGGCGTTGCTTATAATGGGCAGGAGTGTCTTTCTTTATTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGATATTATTATGCCGCATCTGGACGGACTGGCGGTTTTGGAGCGGCTCCGTGAATCAGAGCTTGAGAAACAGCCG
AACGTTATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGCGTCACACACCGTGCGC
CGTCTGCACAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAACGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATTAAAGGCTATCTTTATTTGCGGGAAGCCATTTCCATGGTGTACAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCGATTGAAGTCGCTTGGAGCAGGGGAAATATTGATTCCATTTCTTCGCTGTTCGGGTATACCGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAATTCATTGCGATGGTTGCTGACAAGCTGAGATTAGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97