Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JD965_RS06270 Genome accession   NZ_CP066219
Coordinates   1195170..1196999 (+) Length   609 a.a.
NCBI ID   WP_198698689.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190170..1201999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS06240 (JD965_06240) spx 1190300..1190695 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  JD965_RS06250 (JD965_06250) - 1192042..1192698 (-) 657 WP_198698686.1 TerC family protein -
  JD965_RS06260 (JD965_06260) mecA 1192974..1193630 (+) 657 WP_198698687.1 adaptor protein MecA Regulator
  JD965_RS06265 (JD965_06265) - 1193781..1194941 (+) 1161 WP_198698688.1 competence protein CoiA family protein -
  JD965_RS06270 (JD965_06270) pepF 1195170..1196999 (+) 1830 WP_198698689.1 oligoendopeptidase F Regulator
  JD965_RS06275 (JD965_06275) - 1197034..1197201 (-) 168 WP_016938224.1 hypothetical protein -
  JD965_RS06280 (JD965_06280) spxH 1197486..1198388 (-) 903 WP_198698690.1 protease adaptor protein SpxH -
  JD965_RS06285 (JD965_06285) - 1198385..1198783 (-) 399 WP_198698691.1 thiol management oxidoreductase -
  JD965_RS06290 (JD965_06290) - 1199008..1199694 (-) 687 WP_198698692.1 lytic transglycosylase domain-containing protein -
  JD965_RS06295 (JD965_06295) - 1199699..1200274 (-) 576 WP_198698693.1 CYTH domain-containing protein -
  JD965_RS06300 (JD965_06300) - 1200399..1200764 (+) 366 WP_016938219.1 hypothetical protein -
  JD965_RS06305 (JD965_06305) - 1200792..1201427 (+) 636 WP_016938218.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69771.46 Da        Isoelectric Point: 5.2763

>NTDB_id=518494 JD965_RS06270 WP_198698689.1 1195170..1196999(+) (pepF) [Bacillus siamensis strain B28]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSER
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDEDGKEAQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNELYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=518494 JD965_RS06270 WP_198698689.1 1195170..1196999(+) (pepF) [Bacillus siamensis strain B28]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCGGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CACTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTTTGGGGAAACTTTAT
GCATACGCGCATATGCGTTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCTGCCAGTGCGACTGCTTATATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTGAAGCTTTACTCCCATGCAATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGTGAAAGA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAACACATTCAGTGTGTTAAATAACGCCGATAT
TACGTTTCCGTCAATTAAAGATGAAGACGGCAAGGAAGCTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGACCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAATACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGACAATTTCTACGCCCGTGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAGCATCCCTGAAGAAGTTTATGATAACCTGATCAAAACGATCAATAAACACCTTCCGTTATTACACCGCTACATTG
ATCTGCGGAAGAAGGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGAGGAATACGCGTCAATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTGATGAACTGGCATGACAATGTCAACAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCCTCTAC
GACCAATGAAGCGCTGCTTGGTGAATACATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTACCTGCTCAACCACA
TGCTTGAAGGATTCAGAGGCACAGTGTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAG
GAAGGCGAGCCGCTAACGCCTGAACTGCTGAACGAACTTTATTATGATCTGAATAAAAAGTATTTCGGTGACAACATGGT
GATTGATAAAGAAATCAGTCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCGAATTCTTA
AAAGCGGGAAGCTCAGAATACCCGATCGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGC
GGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAGCTCCTTTCGAAAGTGAACCCTTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488