Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZX95_RS06205 Genome accession   NZ_CP080246
Coordinates   1280820..1281557 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SYNB1934     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275820..1286557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX95_RS06175 yfiL 1275979..1276344 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  KZX95_RS06180 aroF 1276554..1277624 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZX95_RS06185 tyrA 1277635..1278756 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZX95_RS06190 pheA 1278799..1279959 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZX95_RS06195 pheL 1280058..1280105 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZX95_RS06200 raiA 1280209..1280550 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KZX95_RS06205 comL 1280820..1281557 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZX95_RS06210 rluD 1281692..1282672 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZX95_RS06215 yfiH 1282669..1283400 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  KZX95_RS06220 clpC 1283530..1286103 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=518428 KZX95_RS06205 WP_000197686.1 1280820..1281557(-) (comL) [Escherichia coli strain SYNB1934]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=518428 KZX95_RS06205 WP_000197686.1 1280820..1281557(-) (comL) [Escherichia coli strain SYNB1934]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376