Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JC776_RS13905 | Genome accession | NZ_CP066194 |
| Coordinates | 2741577..2742215 (+) | Length | 212 a.a. |
| NCBI ID | WP_265183406.1 | Uniprot ID | - |
| Organism | Bacillus cytotoxicus strain E8.1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2705933..2750302 | 2741577..2742215 | within | 0 |
Gene organization within MGE regions
Location: 2705933..2750302
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC776_RS13630 (JC776_13630) | - | 2705933..2707357 (-) | 1425 | WP_012095429.1 | recombinase family protein | - |
| JC776_RS13635 (JC776_13635) | - | 2707371..2707796 (-) | 426 | WP_012095428.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JC776_RS13640 (JC776_13640) | - | 2707811..2708233 (-) | 423 | WP_048723893.1 | helix-turn-helix transcriptional regulator | - |
| JC776_RS13645 (JC776_13645) | - | 2708506..2708694 (+) | 189 | WP_012095426.1 | helix-turn-helix transcriptional regulator | - |
| JC776_RS22175 | - | 2708691..2709467 (+) | 777 | WP_048723896.1 | ORF6C domain-containing protein | - |
| JC776_RS13660 (JC776_13660) | - | 2709496..2709690 (+) | 195 | WP_048723899.1 | hypothetical protein | - |
| JC776_RS13665 (JC776_13665) | - | 2709719..2709862 (+) | 144 | WP_157671227.1 | hypothetical protein | - |
| JC776_RS13670 (JC776_13670) | - | 2710010..2710276 (+) | 267 | WP_012095422.1 | hypothetical protein | - |
| JC776_RS13675 (JC776_13675) | - | 2710299..2710667 (+) | 369 | WP_012095421.1 | helix-turn-helix transcriptional regulator | - |
| JC776_RS13680 (JC776_13680) | - | 2710731..2711213 (+) | 483 | WP_012095420.1 | siphovirus Gp157 family protein | - |
| JC776_RS13685 (JC776_13685) | - | 2711210..2711881 (+) | 672 | WP_012095419.1 | DUF1071 domain-containing protein | - |
| JC776_RS13690 (JC776_13690) | - | 2711895..2712164 (+) | 270 | WP_012095418.1 | hypothetical protein | - |
| JC776_RS13695 (JC776_13695) | - | 2712165..2712968 (+) | 804 | WP_048723901.1 | conserved phage C-terminal domain-containing protein | - |
| JC776_RS13700 (JC776_13700) | - | 2712898..2713770 (+) | 873 | WP_053083802.1 | ATP-binding protein | - |
| JC776_RS13705 (JC776_13705) | - | 2713781..2714008 (+) | 228 | WP_048723903.1 | hypothetical protein | - |
| JC776_RS13710 (JC776_13710) | - | 2713977..2714159 (+) | 183 | WP_162533109.1 | hypothetical protein | - |
| JC776_RS13715 (JC776_13715) | - | 2714161..2714952 (+) | 792 | WP_094398390.1 | hypothetical protein | - |
| JC776_RS13720 (JC776_13720) | - | 2715106..2715678 (+) | 573 | WP_048723936.1 | dUTP diphosphatase | - |
| JC776_RS13725 (JC776_13725) | - | 2715715..2715915 (+) | 201 | WP_048723905.1 | hypothetical protein | - |
| JC776_RS13730 (JC776_13730) | - | 2715994..2716200 (+) | 207 | WP_048723907.1 | hypothetical protein | - |
| JC776_RS13735 (JC776_13735) | - | 2716243..2716776 (+) | 534 | WP_048723909.1 | hypothetical protein | - |
| JC776_RS13740 (JC776_13740) | - | 2717031..2717462 (+) | 432 | WP_048723912.1 | hypothetical protein | - |
| JC776_RS13745 (JC776_13745) | - | 2717523..2717732 (-) | 210 | WP_048723913.1 | hypothetical protein | - |
| JC776_RS13750 (JC776_13750) | - | 2717833..2718117 (+) | 285 | WP_012095411.1 | hypothetical protein | - |
| JC776_RS13755 (JC776_13755) | - | 2718136..2718282 (+) | 147 | WP_157671228.1 | hypothetical protein | - |
| JC776_RS13760 (JC776_13760) | - | 2718369..2718620 (+) | 252 | WP_048723938.1 | helix-turn-helix transcriptional regulator | - |
| JC776_RS13765 (JC776_13765) | - | 2718636..2718776 (+) | 141 | WP_157671229.1 | hypothetical protein | - |
| JC776_RS13770 (JC776_13770) | - | 2718790..2718957 (+) | 168 | WP_164468645.1 | hypothetical protein | - |
| JC776_RS13775 (JC776_13775) | - | 2719000..2719287 (+) | 288 | WP_048723916.1 | hypothetical protein | - |
| JC776_RS13780 (JC776_13780) | - | 2719292..2719672 (+) | 381 | WP_048723918.1 | ArpU family transcriptional regulator | - |
| JC776_RS13785 (JC776_13785) | - | 2719675..2719842 (+) | 168 | WP_157671230.1 | hypothetical protein | - |
| JC776_RS13790 (JC776_13790) | - | 2719912..2720079 (+) | 168 | WP_164468646.1 | hypothetical protein | - |
| JC776_RS13795 (JC776_13795) | - | 2720076..2720321 (+) | 246 | WP_048723940.1 | helix-turn-helix domain-containing protein | - |
| JC776_RS13800 (JC776_13800) | - | 2721085..2721516 (+) | 432 | WP_048723920.1 | terminase small subunit | - |
| JC776_RS13805 (JC776_13805) | - | 2721509..2722807 (+) | 1299 | WP_041810558.1 | PBSX family phage terminase large subunit | - |
| JC776_RS13810 (JC776_13810) | - | 2722819..2724174 (+) | 1356 | WP_012095405.1 | phage portal protein | - |
| JC776_RS13815 (JC776_13815) | - | 2724161..2725186 (+) | 1026 | WP_012095404.1 | minor capsid protein | - |
| JC776_RS13820 (JC776_13820) | - | 2725256..2725846 (+) | 591 | WP_012095403.1 | DUF4355 domain-containing protein | - |
| JC776_RS13825 (JC776_13825) | - | 2725860..2726702 (+) | 843 | WP_012095402.1 | hypothetical protein | - |
| JC776_RS13830 (JC776_13830) | - | 2726739..2727077 (+) | 339 | WP_012095401.1 | head-tail connector protein | - |
| JC776_RS13835 (JC776_13835) | - | 2727059..2727418 (+) | 360 | WP_012095400.1 | hypothetical protein | - |
| JC776_RS13840 (JC776_13840) | - | 2727402..2727818 (+) | 417 | WP_012095399.1 | hypothetical protein | - |
| JC776_RS13845 (JC776_13845) | - | 2727815..2728195 (+) | 381 | WP_048723923.1 | hypothetical protein | - |
| JC776_RS13850 (JC776_13850) | - | 2728213..2728845 (+) | 633 | WP_048723925.1 | hypothetical protein | - |
| JC776_RS13855 (JC776_13855) | - | 2728891..2729328 (+) | 438 | WP_012095396.1 | hypothetical protein | - |
| JC776_RS13860 (JC776_13860) | - | 2729433..2729630 (+) | 198 | WP_235436463.1 | hypothetical protein | - |
| JC776_RS13865 (JC776_13865) | - | 2729636..2732563 (+) | 2928 | WP_012095394.1 | phage tail tape measure protein | - |
| JC776_RS13870 (JC776_13870) | - | 2732576..2734069 (+) | 1494 | WP_210370715.1 | distal tail protein Dit | - |
| JC776_RS13875 (JC776_13875) | - | 2734070..2738563 (+) | 4494 | WP_053083799.1 | phage tail spike protein | - |
| JC776_RS13880 (JC776_13880) | - | 2738598..2739038 (+) | 441 | WP_012095391.1 | phage holin family protein | - |
| JC776_RS13885 (JC776_13885) | - | 2739038..2739859 (+) | 822 | WP_012095390.1 | GH25 family lysozyme | - |
| JC776_RS13890 (JC776_13890) | - | 2739934..2740374 (-) | 441 | WP_012095389.1 | hypothetical protein | - |
| JC776_RS13895 (JC776_13895) | - | 2740685..2741257 (-) | 573 | WP_012095388.1 | DUF4352 domain-containing protein | - |
| JC776_RS13900 (JC776_13900) | - | 2741374..2741538 (-) | 165 | WP_164468640.1 | hypothetical protein | - |
| JC776_RS13905 (JC776_13905) | comGA | 2741577..2742215 (+) | 639 | WP_265183406.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| JC776_RS13910 (JC776_13910) | comGB | 2742202..2743242 (+) | 1041 | WP_041810011.1 | competence type IV pilus assembly protein ComGB | - |
| JC776_RS13915 (JC776_13915) | comGC | 2743255..2743554 (+) | 300 | WP_012095385.1 | competence type IV pilus major pilin ComGC | - |
| JC776_RS13920 (JC776_13920) | comGD | 2743551..2743997 (+) | 447 | Protein_2677 | competence type IV pilus minor pilin ComGD | - |
| JC776_RS22180 | - | 2743975..2744292 (+) | 318 | WP_235436438.1 | type II secretion system protein | - |
| JC776_RS13925 (JC776_13925) | comGF | 2744271..2744741 (+) | 471 | WP_041810544.1 | competence type IV pilus minor pilin ComGF | - |
| JC776_RS13930 (JC776_13930) | comGG | 2744738..2745112 (+) | 375 | WP_048723614.1 | competence type IV pilus minor pilin ComGG | - |
| JC776_RS13935 (JC776_13935) | - | 2745512..2746009 (+) | 498 | WP_012095381.1 | shikimate kinase | - |
| JC776_RS13940 (JC776_13940) | - | 2746048..2746248 (+) | 201 | WP_048723620.1 | YqzE family protein | - |
| JC776_RS13945 (JC776_13945) | - | 2746394..2747023 (-) | 630 | WP_012095379.1 | VC0807 family protein | - |
| JC776_RS13950 (JC776_13950) | - | 2747342..2747569 (+) | 228 | WP_012095378.1 | hypothetical protein | - |
| JC776_RS13955 (JC776_13955) | - | 2747659..2747805 (+) | 147 | WP_012095377.1 | hypothetical protein | - |
| JC776_RS13960 (JC776_13960) | - | 2747839..2748633 (-) | 795 | WP_012095376.1 | YqhG family protein | - |
| JC776_RS13965 (JC776_13965) | - | 2748620..2750302 (-) | 1683 | WP_087095342.1 | SNF2-related protein | - |
Sequence
Protein
Download Length: 212 a.a. Molecular weight: 23775.70 Da Isoelectric Point: 9.4652
>NTDB_id=518408 JC776_RS13905 WP_265183406.1 2741577..2742215(+) (comGA) [Bacillus cytotoxicus strain E8.1]
MRSCIYVTKTTGSGKTTTMYALLEVAKKGQTRRIVTLEDPVEKRKNGLLQIQINEKAGITYETGLKAILRHDPDIILVGE
IRDEETAKVAVRASLTGHLVMTTLHTNDAKGAVLRLMDFGISRQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKSIRQV
RQASIYELLYGHELKKAIREANGERVVYRYETLQSSLKKGYALGFLEEDVYV
MRSCIYVTKTTGSGKTTTMYALLEVAKKGQTRRIVTLEDPVEKRKNGLLQIQINEKAGITYETGLKAILRHDPDIILVGE
IRDEETAKVAVRASLTGHLVMTTLHTNDAKGAVLRLMDFGISRQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKSIRQV
RQASIYELLYGHELKKAIREANGERVVYRYETLQSSLKKGYALGFLEEDVYV
Nucleotide
Download Length: 639 bp
>NTDB_id=518408 JC776_RS13905 WP_265183406.1 2741577..2742215(+) (comGA) [Bacillus cytotoxicus strain E8.1]
ATTCGGAGTTGTATTTATGTTACTAAAACAACTGGATCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTTGCCAA
AAAAGGTCAAACACGCCGGATTGTTACATTGGAAGATCCGGTGGAGAAAAGAAAGAACGGTTTATTACAAATTCAAATTA
ATGAAAAAGCAGGGATTACGTATGAGACAGGTTTAAAGGCAATTTTACGGCATGACCCAGATATTATTTTAGTGGGGGAA
ATTCGTGATGAAGAAACAGCAAAAGTGGCTGTACGTGCAAGTTTAACAGGTCATTTAGTAATGACAACGCTGCATACAAA
TGATGCGAAAGGTGCTGTATTGCGCTTGATGGATTTTGGAATTAGCAGACAGGAAATTGAACAGTCGTTATTAGCTGTAG
CCGCTCAGCGCCTTGTAGAGTTGAAATGTCCGTTTTGTAAAGGGAAGTGTTCACCATTATGTAAATCGATACGCCAAGTA
CGGCAAGCAAGCATTTATGAGTTGCTATATGGTCATGAATTGAAGAAAGCCATTCGCGAAGCGAATGGCGAACGTGTGGT
GTATCGCTATGAAACATTACAATCTTCATTAAAGAAAGGCTATGCTTTAGGATTTTTAGAAGAGGATGTTTATGTTTAA
ATTCGGAGTTGTATTTATGTTACTAAAACAACTGGATCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTTGCCAA
AAAAGGTCAAACACGCCGGATTGTTACATTGGAAGATCCGGTGGAGAAAAGAAAGAACGGTTTATTACAAATTCAAATTA
ATGAAAAAGCAGGGATTACGTATGAGACAGGTTTAAAGGCAATTTTACGGCATGACCCAGATATTATTTTAGTGGGGGAA
ATTCGTGATGAAGAAACAGCAAAAGTGGCTGTACGTGCAAGTTTAACAGGTCATTTAGTAATGACAACGCTGCATACAAA
TGATGCGAAAGGTGCTGTATTGCGCTTGATGGATTTTGGAATTAGCAGACAGGAAATTGAACAGTCGTTATTAGCTGTAG
CCGCTCAGCGCCTTGTAGAGTTGAAATGTCCGTTTTGTAAAGGGAAGTGTTCACCATTATGTAAATCGATACGCCAAGTA
CGGCAAGCAAGCATTTATGAGTTGCTATATGGTCATGAATTGAAGAAAGCCATTCGCGAAGCGAATGGCGAACGTGTGGT
GTATCGCTATGAAACATTACAATCTTCATTAAAGAAAGGCTATGCTTTAGGATTTTTAGAAGAGGATGTTTATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
96.698 |
0.58 |
| pilB | Vibrio campbellii strain DS40M4 |
37.383 |
100 |
0.377 |
| pilB | Haemophilus influenzae 86-028NP |
46.471 |
80.189 |
0.373 |