Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JC775_RS15120 Genome accession   NZ_CP066192
Coordinates   3012725..3014464 (-) Length   579 a.a.
NCBI ID   WP_087099121.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain E17.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3007725..3019464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC775_RS20840 - 3008437..3008622 (-) 186 WP_242136722.1 hypothetical protein -
  JC775_RS15105 (JC775_15105) spo0A 3008755..3009549 (-) 795 WP_012095325.1 sporulation transcription factor Spo0A Regulator
  JC775_RS15115 (JC775_15115) spoIVB 3011307..3012605 (-) 1299 WP_012095326.1 SpoIVB peptidase -
  JC775_RS15120 (JC775_15120) recN 3012725..3014464 (-) 1740 WP_087099121.1 DNA repair protein RecN Machinery gene
  JC775_RS15125 (JC775_15125) argR 3014712..3015161 (-) 450 WP_012095328.1 arginine repressor ArgR -
  JC775_RS15130 (JC775_15130) - 3015304..3016143 (-) 840 WP_012095329.1 TlyA family RNA methyltransferase -
  JC775_RS15135 (JC775_15135) dxs 3016147..3018039 (-) 1893 WP_012095330.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JC775_RS15140 (JC775_15140) - 3018324..3019175 (-) 852 WP_087095437.1 polyprenyl synthetase family protein -
  JC775_RS15145 (JC775_15145) xseB 3019217..3019447 (-) 231 WP_012095332.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65924.21 Da        Isoelectric Point: 4.8679

>NTDB_id=518355 JC775_RS15120 WP_087099121.1 3012725..3014464(-) (recN) [Bacillus cytotoxicus strain E17.4]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCIAK
AEELDIEIEDGMMILKRDIAANGKSVCRINGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGNRIVKQL
EKYQEVYVKYEQLKKQLKALTENEQQMAHRLDLIQFQYEEIRKADLKVDEEEELTEERLKISNFEKIYKALGDAYRSLTA
DGQGLDHVRNAMGQMESIAHLDESYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIEKAKKELKELESVILKEATMLSDMRHELAERLTSAIHQELKELYMEKTKFEVRIT
KKEGNIEDPLVEGIPVKLTVDGYDQVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHHGVTSVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTMTSVTILSPDDKVTEIARMISGVEITDLTTEH
AKELLTQANHFKQAAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=518355 JC775_RS15120 WP_087099121.1 3012725..3014464(-) (recN) [Bacillus cytotoxicus strain E17.4]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGCTTAACTGTATT
AAGTGGTGAAACAGGAGCTGGAAAATCAATTATTATTGATGCAATTAGCTTGCTTGTTGGTGGTCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAAGCAGAAATTGAAGGATTGTTTTATATAGAGGACGATAAGCACCCGTGCATTGCGAAG
GCAGAAGAGCTGGATATTGAAATTGAAGATGGCATGATGATTTTAAAACGCGACATAGCTGCGAATGGAAAAAGTGTATG
TCGCATAAATGGTAAACTTGTTACATTAAGCATATTGAAAGAAATTGGGAAAACACTTGTTGATATTCACGGACAACATG
AGACACAAGATTTAATGAATGAAGAACGGCATCTCTTTATGCTGGATCATTTCGATGGAAATCGAATTGTAAAACAATTA
GAAAAATATCAAGAAGTATATGTAAAGTATGAACAATTGAAGAAACAATTAAAAGCTTTAACAGAAAATGAACAACAGAT
GGCTCACCGATTGGATTTAATTCAATTCCAATATGAAGAAATTCGTAAAGCGGATTTAAAGGTAGATGAAGAAGAGGAAT
TAACAGAGGAGCGCTTGAAAATCTCTAATTTTGAGAAGATTTATAAAGCGTTAGGTGATGCTTATCGTTCATTAACTGCA
GATGGACAAGGCCTTGATCATGTGCGAAATGCAATGGGGCAAATGGAGAGTATTGCACATTTAGATGAATCGTATCAAGA
AAATCATGATTCAATAGCAAATAGCTATTATTTGCTGGAAGAAGTAGCCTATCAGCTAAGAGAAAAATTAGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATTGAAACTCGTTTAAATGAAATTCGTATGCTAAAGAGAAAGTATGGCAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATAGAGCAAGAAATATTTACGATTGAAAATAAAGATGTGCATATTGAAAA
GGCTAAAAAAGAGTTAAAAGAATTGGAAAGTGTAATCTTAAAAGAAGCGACAATGTTAAGTGATATGCGTCATGAACTTG
CAGAGCGCTTAACAAGTGCTATTCACCAAGAATTGAAAGAACTATATATGGAAAAAACAAAATTTGAAGTGAGAATAACA
AAAAAAGAAGGAAATATAGAAGATCCACTCGTTGAAGGAATACCTGTCAAATTAACAGTGGATGGATATGACCAAGTGGA
GTTCTATATTTCCACAAATCCAGGTGAACCGTTGAAACAACTTTCAAAAGTTGCTTCTGGAGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAGAGTATTTTTTCGAAACATCATGGTGTCACATCTGTCATTTTTGATGAAGTGGATACAGGTGTGAGC
GGCCGAGTTGCACAAGCGATTGCTGAAAAAATTTACAGGGTATCAGTAAATTCACAAGTACTTTGCATTACTCATTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATCCGAAAGCAAGTGGCGAATGATCGGACAATGACATCTGTCACAA
TACTAAGTCCAGACGATAAAGTGACAGAAATTGCTCGTATGATTTCTGGTGTAGAAATTACGGATTTAACTACGGAACAT
GCGAAAGAGTTACTTACGCAAGCAAATCATTTTAAGCAAGCAGCAGAAGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

99.136

0.592