Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC775_RS09950 Genome accession   NZ_CP066192
Coordinates   2005393..2005671 (+) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain E17.4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000393..2010671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC775_RS20615 - 2001091..2001294 (+) 204 WP_235436391.1 DUF1093 domain-containing protein -
  JC775_RS09925 (JC775_09925) scnR 2001395..2002108 (+) 714 WP_048722965.1 response regulator transcription factor Regulator
  JC775_RS09930 (JC775_09930) - 2002109..2003515 (+) 1407 WP_048722967.1 HAMP domain-containing sensor histidine kinase -
  JC775_RS09935 (JC775_09935) - 2003872..2004210 (-) 339 WP_087098723.1 DUF4064 domain-containing protein -
  JC775_RS09940 (JC775_09940) - 2004227..2004730 (-) 504 WP_048722972.1 DUF4352 domain-containing protein -
  JC775_RS09945 (JC775_09945) - 2004660..2004968 (+) 309 WP_140388422.1 hypothetical protein -
  JC775_RS09950 (JC775_09950) abrB 2005393..2005671 (+) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC775_RS09955 (JC775_09955) - 2005890..2006684 (+) 795 WP_048722974.1 LysM peptidoglycan-binding domain-containing protein -
  JC775_RS09960 (JC775_09960) - 2006892..2007089 (+) 198 WP_048722977.1 hypothetical protein -
  JC775_RS09965 (JC775_09965) - 2007247..2008938 (-) 1692 WP_048722979.1 M3 family oligoendopeptidase -
  JC775_RS09970 (JC775_09970) - 2009590..2010222 (+) 633 WP_048722981.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=518347 JC775_RS09950 WP_012094321.1 2005393..2005671(+) (abrB) [Bacillus cytotoxicus strain E17.4]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=518347 JC775_RS09950 WP_012094321.1 2005393..2005671(+) (abrB) [Bacillus cytotoxicus strain E17.4]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGGGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62