Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZW92_RS09860 Genome accession   NZ_CP080235
Coordinates   1979985..1980722 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O139:H1 strain W13-16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1974985..1985722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW92_RS09845 (KZW92_09850) clpC 1975439..1978012 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KZW92_RS09850 (KZW92_09855) yfiH 1978142..1978873 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  KZW92_RS09855 (KZW92_09860) rluD 1978870..1979850 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZW92_RS09860 (KZW92_09865) comL 1979985..1980722 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZW92_RS09865 (KZW92_09870) raiA 1980993..1981334 (+) 342 WP_063085007.1 ribosome-associated translation inhibitor RaiA -
  KZW92_RS09870 (KZW92_09875) pheL 1981438..1981485 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZW92_RS09875 (KZW92_09880) pheA 1981584..1982744 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZW92_RS09880 (KZW92_09885) tyrA 1982787..1983908 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZW92_RS09885 (KZW92_09890) aroF 1983919..1984989 (-) 1071 WP_063085133.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZW92_RS09890 (KZW92_09895) yfiL 1985199..1985564 (+) 366 WP_001353010.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=518341 KZW92_RS09860 WP_000197686.1 1979985..1980722(+) (comL) [Escherichia coli O139:H1 strain W13-16]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=518341 KZW92_RS09860 WP_000197686.1 1979985..1980722(+) (comL) [Escherichia coli O139:H1 strain W13-16]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376