Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JC774_RS09765 Genome accession   NZ_CP066179
Coordinates   1852318..1854057 (+) Length   579 a.a.
NCBI ID   WP_087099121.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM2.8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847318..1859057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS09740 (JC774_09740) xseB 1847335..1847565 (+) 231 WP_012095332.1 exodeoxyribonuclease VII small subunit -
  JC774_RS09745 (JC774_09745) - 1847607..1848458 (+) 852 WP_087095437.1 polyprenyl synthetase family protein -
  JC774_RS09750 (JC774_09750) dxs 1848743..1850635 (+) 1893 WP_012095330.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JC774_RS09755 (JC774_09755) - 1850639..1851478 (+) 840 WP_012095329.1 TlyA family RNA methyltransferase -
  JC774_RS09760 (JC774_09760) argR 1851621..1852070 (+) 450 WP_012095328.1 arginine repressor ArgR -
  JC774_RS09765 (JC774_09765) recN 1852318..1854057 (+) 1740 WP_087099121.1 DNA repair protein RecN Machinery gene
  JC774_RS09770 (JC774_09770) spoIVB 1854177..1855475 (+) 1299 WP_012095326.1 SpoIVB peptidase -
  JC774_RS09775 (JC774_09775) - 1855578..1856911 (+) 1334 WP_210351372.1 IS3 family transposase -
  JC774_RS09780 (JC774_09780) spo0A 1857233..1858027 (+) 795 WP_012095325.1 sporulation transcription factor Spo0A Regulator
  JC774_RS22135 - 1858160..1858345 (+) 186 WP_242136722.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65924.21 Da        Isoelectric Point: 4.8679

>NTDB_id=518152 JC774_RS09765 WP_087099121.1 1852318..1854057(+) (recN) [Bacillus cytotoxicus strain SM2.8]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCIAK
AEELDIEIEDGMMILKRDIAANGKSVCRINGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGNRIVKQL
EKYQEVYVKYEQLKKQLKALTENEQQMAHRLDLIQFQYEEIRKADLKVDEEEELTEERLKISNFEKIYKALGDAYRSLTA
DGQGLDHVRNAMGQMESIAHLDESYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIEKAKKELKELESVILKEATMLSDMRHELAERLTSAIHQELKELYMEKTKFEVRIT
KKEGNIEDPLVEGIPVKLTVDGYDQVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHHGVTSVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTMTSVTILSPDDKVTEIARMISGVEITDLTTEH
AKELLTQANHFKQAAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=518152 JC774_RS09765 WP_087099121.1 1852318..1854057(+) (recN) [Bacillus cytotoxicus strain SM2.8]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGCTTAACTGTATT
AAGTGGTGAAACAGGAGCTGGAAAATCAATTATTATTGATGCAATTAGCTTGCTTGTTGGTGGTCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAAGCAGAAATTGAAGGATTGTTTTATATAGAGGACGATAAGCACCCGTGCATTGCGAAG
GCAGAAGAGCTGGATATTGAAATTGAAGATGGCATGATGATTTTAAAACGCGACATAGCTGCGAATGGAAAAAGTGTATG
TCGCATAAATGGTAAACTTGTTACATTAAGCATATTGAAAGAAATTGGGAAAACACTTGTTGATATTCACGGACAACATG
AGACACAAGATTTAATGAATGAAGAACGGCATCTCTTTATGCTGGATCATTTCGATGGAAATCGAATTGTAAAACAATTA
GAAAAATATCAAGAAGTATATGTAAAGTATGAACAATTGAAGAAACAATTAAAAGCTTTAACAGAAAATGAACAACAGAT
GGCTCACCGATTGGATTTAATTCAATTCCAATATGAAGAAATTCGTAAAGCGGATTTAAAGGTAGATGAAGAAGAGGAAT
TAACAGAGGAGCGCTTGAAAATCTCTAATTTTGAGAAGATTTATAAAGCGTTAGGTGATGCTTATCGTTCATTAACTGCA
GATGGACAAGGCCTTGATCATGTGCGAAATGCAATGGGGCAAATGGAGAGTATTGCACATTTAGATGAATCGTATCAAGA
AAATCATGATTCAATAGCAAATAGCTATTATTTGCTGGAAGAAGTAGCCTATCAGCTAAGAGAAAAATTAGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATTGAAACTCGTTTAAATGAAATTCGTATGCTAAAGAGAAAGTATGGCAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATAGAGCAAGAAATATTTACGATTGAAAATAAAGATGTGCATATTGAAAA
GGCTAAAAAAGAGTTAAAAGAATTGGAAAGTGTAATCTTAAAAGAAGCGACAATGTTAAGTGATATGCGTCATGAACTTG
CAGAGCGCTTAACAAGTGCTATTCACCAAGAATTGAAAGAACTATATATGGAAAAAACAAAATTTGAAGTGAGAATAACA
AAAAAAGAAGGAAATATAGAAGATCCACTCGTTGAAGGAATACCTGTCAAATTAACAGTGGATGGATATGACCAAGTGGA
GTTCTATATTTCCACAAATCCAGGTGAACCGTTGAAACAACTTTCAAAAGTTGCTTCTGGAGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAGAGTATTTTTTCGAAACATCATGGTGTCACATCTGTCATTTTTGATGAAGTGGATACAGGTGTGAGC
GGCCGAGTTGCACAAGCGATTGCTGAAAAAATTTACAGGGTATCAGTAAATTCACAAGTACTTTGCATTACTCATTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATCCGAAAGCAAGTGGCGAATGATCGGACAATGACATCTGTCACAA
TACTAAGTCCAGACGATAAAGTGACAGAAATTGCTCGTATGATTTCTGGTGTAGAAATTACGGATTTAACTACGGAACAT
GCGAAAGAGTTACTTACGCAAGCAAATCATTTTAAGCAAGCAGCAGAAGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

99.136

0.592