Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   JDY60_RS01575 Genome accession   NZ_CP066172
Coordinates   336234..337466 (+) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis strain SF100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 331234..342466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS01540 (JDY60_01540) galE 331906..332925 (+) 1020 WP_001156532.1 UDP-glucose 4-epimerase GalE -
  JDY60_RS01545 (JDY60_01545) - 332927..333892 (+) 966 WP_200371058.1 glycosyltransferase family 2 protein -
  JDY60_RS01550 (JDY60_01550) - 333968..334171 (-) 204 WP_161802764.1 ferredoxin -
  JDY60_RS01555 (JDY60_01555) - 334217..334723 (+) 507 WP_200371060.1 SAG1386/EF1546 family surface-associated protein -
  JDY60_RS01560 (JDY60_01560) cmk 334733..335407 (+) 675 WP_200371062.1 (d)CMP kinase -
  JDY60_RS01565 (JDY60_01565) - 335526..336032 (+) 507 WP_000162306.1 dihydrofolate reductase -
  JDY60_RS01570 (JDY60_01570) - 336032..336202 (+) 171 WP_000442252.1 hypothetical protein -
  JDY60_RS01575 (JDY60_01575) clpX 336234..337466 (+) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  JDY60_RS01580 (JDY60_01580) yihA 337475..338062 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JDY60_RS01585 (JDY60_01585) - 338072..338452 (+) 381 WP_001140420.1 RidA family protein -
  JDY60_RS01590 (JDY60_01590) rapZ 338504..339394 (+) 891 WP_000163039.1 RNase adapter RapZ -
  JDY60_RS01595 (JDY60_01595) - 339391..340368 (+) 978 WP_200371063.1 YvcK family protein -
  JDY60_RS01600 (JDY60_01600) whiA 340365..341276 (+) 912 WP_125441278.1 DNA-binding protein WhiA -
  JDY60_RS01605 (JDY60_01605) - 341309..342277 (-) 969 WP_200371064.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=518034 JDY60_RS01575 WP_002874765.1 336234..337466(+) (clpX) [Streptococcus oralis strain SF100]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=518034 JDY60_RS01575 WP_002874765.1 336234..337466(+) (clpX) [Streptococcus oralis strain SF100]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAATGCCTTTATCTGTAATGAATGTGTGGAATTGGCCCAGGAAATCATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGATTTGTCTGAAGTACCAAAACCAATCGAGCTCCTCAATATCCTAAATCACTATGTGATCGGTCAGGATCGT
GCTAAACGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACTCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAATATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACCTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCCGCTGACTTTAACATCGAACGTGCAGAGCGTGGAATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGACGTTTCGGGTGAAGGAGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCACCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACC
AAGAATATCCTCTTTATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATCGTCAAACAACGTCTGGGAGAAAAAGTCAT
CGGTTTTGGCCAAAATAACAAGGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCTGAAGATATTCAAAAAT
TTGGGATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTTGATGACTTGGTTCGC
ATCCTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAAGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTGGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563