Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ICJ33_RS26510 Genome accession   NZ_CP066169
Coordinates   5796590..5796997 (-) Length   135 a.a.
NCBI ID   WP_010207217.1    Uniprot ID   -
Organism   Pseudomonas simiae strain K-Hf-L9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5791590..5801997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ33_RS26495 (ICJ33_26635) - 5793593..5795644 (-) 2052 WP_010207214.1 methyl-accepting chemotaxis protein -
  ICJ33_RS26500 (ICJ33_26640) - 5795641..5796165 (-) 525 WP_010207215.1 chemotaxis protein CheW -
  ICJ33_RS26505 (ICJ33_26645) pilH 5796178..5796543 (-) 366 WP_010207216.1 twitching motility response regulator PilH -
  ICJ33_RS26510 (ICJ33_26650) pilG 5796590..5796997 (-) 408 WP_010207217.1 twitching motility response regulator PilG Regulator
  ICJ33_RS26515 (ICJ33_26655) gshB 5797237..5798190 (+) 954 WP_010207218.1 glutathione synthase -
  ICJ33_RS26520 (ICJ33_26660) - 5798268..5799173 (+) 906 WP_010207219.1 energy transducer TonB -
  ICJ33_RS26525 (ICJ33_26665) - 5799241..5799810 (+) 570 WP_010207221.1 YqgE/AlgH family protein -
  ICJ33_RS26530 (ICJ33_26670) ruvX 5799810..5800247 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  ICJ33_RS26535 (ICJ33_26675) pyrR 5800329..5800835 (+) 507 WP_010207223.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ICJ33_RS26540 (ICJ33_26680) - 5800860..5801864 (+) 1005 WP_010207224.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14892.38 Da        Isoelectric Point: 7.3841

>NTDB_id=518013 ICJ33_RS26510 WP_010207217.1 5796590..5796997(-) (pilG) [Pseudomonas simiae strain K-Hf-L9]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKDELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=518013 ICJ33_RS26510 WP_010207217.1 5796590..5796997(-) (pilG) [Pseudomonas simiae strain K-Hf-L9]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGTACCGCTGAAACTTTGTT
GAAGAATGTGGGATGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTCGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCACTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATTGTCGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGACGAACTGCTGGGTGCGATCAAGGCCTACGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659
  vicR Streptococcus mutans UA159

38.889

93.333

0.363