Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ICJ33_RS16815 Genome accession   NZ_CP066169
Coordinates   3722983..3725208 (-) Length   741 a.a.
NCBI ID   WP_240351977.1    Uniprot ID   -
Organism   Pseudomonas simiae strain K-Hf-L9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717983..3730208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ33_RS16780 (ICJ33_16880) murB 3718388..3719407 (-) 1020 WP_183703146.1 UDP-N-acetylmuramate dehydrogenase -
  ICJ33_RS16785 (ICJ33_16885) - 3719404..3719868 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  ICJ33_RS16790 (ICJ33_16890) kdsB 3719868..3720632 (-) 765 WP_042572155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ICJ33_RS16795 (ICJ33_16895) - 3720629..3720814 (-) 186 WP_003174668.1 Trm112 family protein -
  ICJ33_RS16800 (ICJ33_16900) lpxK 3720839..3721849 (-) 1011 WP_010209651.1 tetraacyldisaccharide 4'-kinase -
  ICJ33_RS16805 (ICJ33_16905) - 3721849..3722277 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  ICJ33_RS16810 (ICJ33_16910) exbB 3722274..3722909 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ICJ33_RS16815 (ICJ33_16915) comA 3722983..3725208 (-) 2226 WP_240351977.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ICJ33_RS16820 (ICJ33_16920) - 3725344..3725859 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  ICJ33_RS16825 (ICJ33_16925) - 3725856..3727226 (-) 1371 WP_010209646.1 sensor histidine kinase -
  ICJ33_RS16830 (ICJ33_16930) - 3727213..3727941 (-) 729 WP_021492750.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80476.52 Da        Isoelectric Point: 10.9694

>NTDB_id=518005 ICJ33_RS16815 WP_240351977.1 3722983..3725208(-) (comA) [Pseudomonas simiae strain K-Hf-L9]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
QVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAAAAWRDSMHQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWWPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGRMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLHVQAKGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=518005 ICJ33_RS16815 WP_240351977.1 3722983..3725208(-) (comA) [Pseudomonas simiae strain K-Hf-L9]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCCGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CAGGTCAGCGGGCTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGT
ACGGTAAAGGACGGAGAACGCCTGGCCCCGGCTGCCGCCGCCTGGCGTGACAGTATGCATCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCAGGGAGGCCGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TGCAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGTCATCTCGGGCTGTGGTGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGCGGACGGCTGGGGCC
CTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTGTTGGGGT
TGCCCATCAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCGGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCCTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCG
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGATGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCATGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CAGGCCATGCTCGCGTCCCCCCTTGCGGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAGCGACTTGCGCCGCGATCCGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACTCTGCCGAGCAGGGCGCCGTGCGTCTGCGATTG
GGGGCTTTCGCAGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.417

97.166

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.865

100

0.399