Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ITG10_RS04905 Genome accession   NZ_CP066149
Coordinates   1147556..1148161 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio sp. ED004     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142556..1153161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS04885 (ITG10_04820) - 1142795..1143712 (-) 918 WP_017633238.1 ABC transporter ATP-binding protein -
  ITG10_RS04890 (ITG10_04825) - 1144027..1145658 (-) 1632 WP_017633237.1 SulP family inorganic anion transporter -
  ITG10_RS04895 (ITG10_04830) can 1145945..1146613 (+) 669 WP_017633236.1 carbonate dehydratase -
  ITG10_RS04900 (ITG10_04835) hpt 1146688..1147218 (-) 531 WP_017633235.1 hypoxanthine phosphoribosyltransferase -
  ITG10_RS04905 (ITG10_04840) opaR 1147556..1148161 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ITG10_RS04910 (ITG10_04845) - 1148212..1149406 (-) 1195 Protein_967 ISL3 family transposase -
  ITG10_RS04915 (ITG10_04850) lpdA 1149778..1151208 (-) 1431 WP_017630530.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=517861 ITG10_RS04905 WP_048664508.1 1147556..1148161(+) (opaR) [Vibrio sp. ED004]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=517861 ITG10_RS04905 WP_048664508.1 1147556..1148161(+) (opaR) [Vibrio sp. ED004]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTGTTCTCTCGCCGTGGCATTGGCCGTGGTGGACACGCAGACATTGCAGATATTGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTTCCAACCCGTGAAGATCTGGTTGATGAAGTACTGAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
CAGCCATTGGTTGAACGTATGGTTCGAATGGAGCGCATCAACTCGCGATGAAGTATGGCCTCTATTCGTAACCACTAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAG
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCGCTATTCATTCAAGCGAAACGTGTAGAAACGCCTGAAGAGCTTTC
AAGCTTGACGGATAGCTACCTAAACATGCTGTGTATCTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726