Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JC616_RS12975 Genome accession   NZ_CP066126
Coordinates   2857987..2858778 (-) Length   263 a.a.
NCBI ID   WP_107798797.1    Uniprot ID   A0A2T5NGN2
Organism   Chromobacterium rhizoryzae strain 32279     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2852987..2863778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS12960 - 2854805..2855143 (+) 339 WP_019100167.1 P-II family nitrogen regulator -
  JC616_RS12965 - 2855322..2856119 (-) 798 WP_227103431.1 hypothetical protein -
  JC616_RS12970 - 2856330..2857844 (-) 1515 WP_227103433.1 hypothetical protein -
  JC616_RS12975 comL 2857987..2858778 (-) 792 WP_107798797.1 outer membrane protein assembly factor BamD Machinery gene
  JC616_RS12980 rluD 2858777..2859880 (+) 1104 WP_107798796.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JC616_RS12985 pgeF 2859870..2860625 (+) 756 WP_227103435.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30332.42 Da        Isoelectric Point: 6.9811

>NTDB_id=517643 JC616_RS12975 WP_107798797.1 2857987..2858778(-) (comL) [Chromobacterium rhizoryzae strain 32279]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHYK
DNEPEQAIASADRFIKLHPTHPNLDYIYYLKGLVFYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELVTRFPNSIYKE
DASKKMERLLDALGGNEMHVARYYMKRGAYLAAANRAQGVVKSYANTKYPEEALGIMVAAYDKLSMPQLRDDAKRVLALN
YPNSEYLKEGWSIEDMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=517643 JC616_RS12975 WP_107798797.1 2857987..2858778(-) (comL) [Chromobacterium rhizoryzae strain 32279]
ATGAAAAGATACGTTGTCGCTGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGATGAGACTCG
CGGCTGGACCGTGGAAAAGCTGTATTCGGAAGCGCATGATGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTGGAAGCGCGTTTCCCTTACGGGCGCTACGCCCAGCAGGCGCAGATGGACCTGGCTTACACCCATTACAAG
GATAATGAGCCGGAGCAGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTTCATCCCACCCATCCAAACCTGGACTACAT
CTATTATCTGAAAGGCTTGGTGTTTTACAACGATGATTCCGGGCTGCTGGCCAAATGGGCCGGTCAGGACATGAGCGAGC
GCGATCCGCGCGCCGCGCGCGAGGCTTTCGCCGCCTTCCGCGAGCTGGTGACGCGCTTCCCCAACAGCATTTACAAGGAA
GACGCCTCCAAGAAGATGGAGCGGCTGCTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCCCGTTATTACATGAAGCG
CGGCGCTTACCTGGCGGCGGCCAACCGCGCCCAGGGCGTGGTGAAGAGTTACGCCAACACCAAGTATCCGGAAGAGGCGT
TGGGCATCATGGTGGCGGCTTACGACAAGCTGTCCATGCCGCAGCTGCGCGACGACGCCAAGCGCGTGCTGGCGCTGAAC
TACCCTAATAGCGAATACCTGAAAGAAGGCTGGTCCATCGAGGACATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5NGN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.271

100

0.589
  comL Neisseria gonorrhoeae MS11

57.143

100

0.578