Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JC624_RS18155 Genome accession   NZ_CP066124
Coordinates   3776967..3778535 (+) Length   522 a.a.
NCBI ID   WP_227062294.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3771967..3783535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS18135 hom 3772461..3773762 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  JC624_RS18140 thrC 3773817..3774956 (+) 1140 WP_002048893.1 threonine synthase -
  JC624_RS18145 pbpG 3775062..3776108 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  JC624_RS18150 gacA 3776321..3776956 (+) 636 WP_002121174.1 response regulator -
  JC624_RS18155 pilS 3776967..3778535 (+) 1569 WP_227062294.1 sensor histidine kinase Regulator
  JC624_RS18160 pilR 3778559..3779971 (+) 1413 WP_005065713.1 sigma-54-dependent transcriptional regulator Regulator
  JC624_RS18165 ctpA 3779975..3781159 (-) 1185 WP_227062296.1 S41 family peptidase -
  JC624_RS18170 gpmI 3781175..3782722 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59025.57 Da        Isoelectric Point: 6.4276

>NTDB_id=517595 JC624_RS18155 WP_227062294.1 3776967..3778535(+) (pilS) [Acinetobacter pittii strain 32292]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSAAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECSIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=517595 JC624_RS18155 WP_227062294.1 3776967..3778535(+) (pilS) [Acinetobacter pittii strain 32292]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCTGCTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATATGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTATATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTATTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGTTTTAAACTACTTGAAGCACTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTCC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTAGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCACAACAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATTCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGCCGCGGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTACCCAATCCAGATCGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCTCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944