Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   JC624_RS10420 Genome accession   NZ_CP066124
Coordinates   2172953..2173333 (-) Length   126 a.a.
NCBI ID   WP_068566166.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167953..2178333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS10390 tadA 2167957..2168460 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  JC624_RS10395 hibch 2168466..2169590 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  JC624_RS10400 ung 2169587..2170300 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  JC624_RS10405 - 2170354..2170950 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  JC624_RS10410 gspK 2171178..2172137 (-) 960 WP_068566173.1 type II secretion system minor pseudopilin GspK -
  JC624_RS10415 xcpW 2172138..2172953 (-) 816 WP_068566169.1 type II secretion system minor pseudopilin GspJ Machinery gene
  JC624_RS10420 xcpV 2172953..2173333 (-) 381 WP_068566166.1 type II secretion system minor pseudopilin GspI Machinery gene
  JC624_RS10425 - 2173323..2173877 (-) 555 WP_068527582.1 type II secretion system protein -
  JC624_RS10430 - 2173884..2174492 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  JC624_RS10435 ycfH 2174529..2175302 (-) 774 WP_057085323.1 TatD family hydrolase -
  JC624_RS10440 pilZ 2175320..2175661 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  JC624_RS10445 holB 2175672..2176652 (-) 981 WP_068566161.1 DNA polymerase III subunit delta' -
  JC624_RS10450 kdsB 2176666..2177427 (-) 762 WP_068566158.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13990.20 Da        Isoelectric Point: 9.4463

>NTDB_id=517578 JC624_RS10420 WP_068566166.1 2172953..2173333(-) (xcpV) [Acinetobacter pittii strain 32292]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=517578 JC624_RS10420 WP_068566166.1 2172953..2173333(-) (xcpV) [Acinetobacter pittii strain 32292]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAATAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944