NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	JC624_RS10415	Genome accession	NZ_CP066124
Coordinates	2172138..2172953 (-)	Length	271 a.a.
NCBI ID	WP_068566169.1	Uniprot ID	-
Organism	Acinetobacter pittii strain 32292
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2167138..2177953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC624_RS10385	-	2167446..2167886 (-)	441	WP_063098719.1	SRPBCC family protein	-
JC624_RS10390	tadA	2167957..2168460 (-)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
JC624_RS10395	hibch	2168466..2169590 (-)	1125	WP_014206599.1	enoyl-CoA hydratase/isomerase family protein	-
JC624_RS10400	ung	2169587..2170300 (-)	714	WP_005069527.1	uracil-DNA glycosylase	-
JC624_RS10405	-	2170354..2170950 (-)	597	WP_017386831.1	6-pyruvoyl trahydropterin synthase family protein	-
JC624_RS10410	gspK	2171178..2172137 (-)	960	WP_068566173.1	type II secretion system minor pseudopilin GspK	-
JC624_RS10415	xcpW	2172138..2172953 (-)	816	WP_068566169.1	type II secretion system minor pseudopilin GspJ	Machinery gene
JC624_RS10420	xcpV	2172953..2173333 (-)	381	WP_068566166.1	type II secretion system minor pseudopilin GspI	Machinery gene
JC624_RS10425	-	2173323..2173877 (-)	555	WP_068527582.1	type II secretion system protein	-
JC624_RS10430	-	2173884..2174492 (-)	609	WP_057085321.1	TetR/AcrR family transcriptional regulator	-
JC624_RS10435	ycfH	2174529..2175302 (-)	774	WP_057085323.1	TatD family hydrolase	-
JC624_RS10440	pilZ	2175320..2175661 (-)	342	WP_002121335.1	PilZ domain-containing protein	-
JC624_RS10445	holB	2175672..2176652 (-)	981	WP_068566161.1	DNA polymerase III subunit delta'	-
JC624_RS10450	kdsB	2176666..2177427 (-)	762	WP_068566158.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 271 a.a. Molecular weight: 30929.37 Da Isoelectric Point: 9.7456

                                >NTDB_id=517577 JC624_RS10415 WP_068566169.1 2172138..2172953(-) (xcpW) [Acinetobacter pittii strain 32292]

MIKNKCFRYPSTASRLAVRSEQMMRGDSEQSSSSCTQTKHCFKDSHTRNIVSHLATRSSSARLTRASGFTLVELLVSIAI

FAILSLLGWKVFDYLLKVRDRNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLK

QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQLQIMVLTPQEVTKWPEVNIDPTKPDEFRKLPKG

IKMQLTVAGVSYEWIYSLNQGDLSLSKQGGQ

Nucleotide

Download Length: 816 bp

                                >NTDB_id=517577 JC624_RS10415 WP_068566169.1 2172138..2172953(-) (xcpW) [Acinetobacter pittii strain 32292]

ATGATAAAGAATAAATGTTTTCGCTATCCAAGCACCGCTTCACGTCTTGCGGTACGATCGGAGCAGATGATGAGGGGTGA

CTCCGAGCAAAGCTCTTCGTCTTGCACTCAGACAAAGCATTGCTTTAAAGACTCTCACACTCGAAACATAGTTTCTCATC

TTGCGACACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTTTCAATTGCAATT

TTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGCGATCGTAATACTCAACATGAAGT

GCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTATACCTTTATCAGCCAATCAAG

GCGGGCAATTACGTCCAGCTTTAGAGATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGGGTGTTACTGATCCATTAAAG

CAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGCCTTAAATATAGTAA

CTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACAACTTCAAATTATGGTTTTGA

CACCTCAAGAAGTAACAAAGTGGCCTGAAGTTAACATTGACCCTACAAAACCTGATGAATTTAGGAAGTTGCCAAAAGGA

ATAAAAATGCAACTCACGGTTGCAGGTGTAAGTTATGAGTGGATTTATAGCTTAAACCAAGGTGACTTATCGCTCTCCAA

ACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(121-250)

Prokaryotic N-terminal methylation motif (N_methyl)

(65-87)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	88.444	83.026	0.734

Detailed information NTG0517577