Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JC624_RS02060 Genome accession   NZ_CP066124
Coordinates   428778..429407 (-) Length   209 a.a.
NCBI ID   WP_227062661.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423778..434407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS02025 mlaE 424111..424887 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  JC624_RS02030 - 424887..425567 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  JC624_RS02035 - 425594..426235 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  JC624_RS02040 - 426247..426534 (+) 288 WP_199978361.1 STAS domain-containing protein -
  JC624_RS02045 - 426607..427620 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  JC624_RS02050 - 427779..428360 (+) 582 WP_005804599.1 TIGR00730 family Rossman fold protein -
  JC624_RS02055 mutT 428375..428776 (+) 402 WP_017386994.1 NUDIX hydrolase -
  JC624_RS02060 comF 428778..429407 (-) 630 WP_227062661.1 ComF family protein Machinery gene
  JC624_RS02065 recG 429400..431448 (-) 2049 WP_227062663.1 ATP-dependent DNA helicase RecG -
  JC624_RS02070 - 431469..432284 (+) 816 WP_227062666.1 NAD-dependent epimerase/dehydratase family protein -
  JC624_RS02075 - 432364..433347 (+) 984 WP_227062672.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24462.69 Da        Isoelectric Point: 9.9490

>NTDB_id=517569 JC624_RS02060 WP_227062661.1 428778..429407(-) (comF) [Acinetobacter pittii strain 32292]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=517569 JC624_RS02060 WP_227062661.1 428778..429407(-) (comF) [Acinetobacter pittii strain 32292]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCAATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAGCACTCTCAAAAAGGTCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.466

98.565

0.833
  comF Acinetobacter baumannii D1279779

83.495

98.565

0.823